Factsheet for VIT_01s0011g05230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01540.1	VIT_08s0056g00050.t01	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G70810.1	Thale cress	cytosol	68.67	69.09
VIT_14s0006g01250.t01	Wine grape	cytosol	65.66	66.06
Bra016185.1-P	Field mustard	cytosol	65.66	66.06
KRG89347	Soybean	cytosol	26.51	65.67
VIT_17s0000g02290.t01	Wine grape	cytosol, plastid	70.48	64.64
KRH50393	Soybean	cytosol	65.06	63.53
Solyc06g053390.2.1	Tomato	cytosol, mitochondrion	63.25	62.87
Bra024565.1-P	Field mustard	cytosol	60.24	62.5
PGSC0003DMT400042134	Potato	cytosol	50.6	62.22
KRG94240	Soybean	cytosol	63.25	62.13
GSMUA_Achr10P...	Banana	cytosol	60.24	61.73
KRH38191	Soybean	cytosol	66.87	61.67
AT1G23140.1	Thale cress	cytosol, mitochondrion	60.84	61.21
Bra024877.1-P	Field mustard	cytosol	65.66	60.56
KRG94243	Soybean	cytosol, mitochondrion	63.25	60.34
Bra017445.1-P	Field mustard	cytosol	65.06	60.0
Bra026650.1-P	Field mustard	cytosol	63.86	58.89
AT2G01540.1	Thale cress	cytosol	63.86	58.89
Os02t0327000-01	Rice	cytosol	58.43	58.79
GSMUA_Achr2P15950_001	Banana	cytosol	60.84	58.38
AT1G70800.1	Thale cress	cytosol	60.24	57.47
GSMUA_Achr6P07630_001	Banana	cytosol	57.23	57.23
Bra016186.1-P	Field mustard	cytosol	63.25	56.76
EES01097	Sorghum	cytosol	56.63	56.63
AT1G70790.1	Thale cress	cytosol	61.45	55.14
TraesCS2A01G501300.1	Wheat	mitochondrion	56.02	54.71
HORVU0Hr1G039050.2	Barley	mitochondrion	55.42	54.44
PGSC0003DMT400020051	Potato	cytosol	53.61	54.27
TraesCS2B01G529400.1	Wheat	mitochondrion	55.42	54.12
TraesCS2D01G501800.2	Wheat	mitochondrion	55.42	54.12
PGSC0003DMT400059720	Potato	cytosol	53.01	52.69
Zm00001d011396_P001	Maize	cytosol	55.42	52.27
Solyc04g007800.2.1	Tomato	cytosol	51.81	51.5
Zm00001d044179_P001	Maize	cytosol	58.43	48.26
VIT_00s0531g00030.t01	Wine grape	cytosol	39.76	40.0
Bra003941.1-P	Field mustard	cytosol	57.83	37.94
Bra003940.1-P	Field mustard	cytosol	28.31	33.57
VIT_10s0003g04900.t01	Wine grape	cytosol	43.37	21.82
VIT_13s0019g00350.t01	Wine grape	cytosol	41.57	17.42
CDY23476	Canola	cytosol	0.6	0.85

Protein Annotations

EntrezGene:100252560	wikigene:100252560	MapMan:11.1.2.1.2	Gene3D:2.60.40.150	UniProt:A5BXZ0	EMBL:AM475232
InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CAN75112	ProteinID:CAN75112.1	ProteinID:CCB50815	ProteinID:CCB50815.1
EMBL:FN595752	InterPro:IPR000008	InterPro:IPR035892	EntrezGene:LOC100252560	wikigene:LOC100252560	PFAM:PF00168
PFscan:PS50004	PANTHER:PTHR23180	PANTHER:PTHR23180:SF296	SMART:SM00239	SUPFAM:SSF49562	TIGR:TC54155
UniParc:UPI00015220DF	ArrayExpress:VIT_01s0011g05230	EnsemblPlantsGene:VIT_01s0011g05230	EnsemblPlants:VIT_01s0011g05230.t01	unigene:Vvi.1286	RefSeq:XP_002284632
RefSeq:XP_002284632.1	RefSeq:XP_003631202	RefSeq:XP_003631202.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:4866811..4868166

Molecular Weight (calculated)

18788.7 Da

IEP (calculated)

4.468

GRAVY (calculated)

-0.233

Length

166 amino acids

Sequence
(BLAST)

001: MENLLGLLRL RVRRGINLAV RDARSSDPYV AVTMGEQKLK TRVVKDNCNP EWNEELTLSI ADTDVPINLV VYDSDTFTLD DKMGDAEIDI KPYVECLKMG
101: LENLPTGTVI SRVQPSRTNC LADESCCVWD NGKIRQDMLL RLRNVECGEV EVQIEWINIP GCRGLF

Best Arabidopsis Sequence Match ( AT1G70810.1 )
(BLAST)

001: MEELVGLLRI RVKRGINLAQ RDTLSSDPFV VITMGSQKLK TRVVENNCNP EWNEELTLAL RHPDEPVNLI VYDKDTFTSH DKMGDAKIDI KPFLEVHKMG
101: LQELPDGTEI KRVVPNRENC LAEASSIVSN NGKIVQNMIL LLRNVECGEV EIQLEWIDIP GSRGL

Arabidopsis Description

CAR7Protein C2-DOMAIN ABA-RELATED 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.