Factsheet for VIT_17s0000g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118720.2.1	Tomato	cytosol, mitochondrion	74.59	81.82
Solyc03g118710.2.1	Tomato	cytosol	72.38	79.39
PGSC0003DMT400074100	Potato	cytosol	70.17	76.97
VIT_14s0006g01250.t01	Wine grape	cytosol	69.06	75.76
Solyc12g040800.1.1	Tomato	cytosol	69.06	75.3
Solyc06g068940.2.1	Tomato	cytosol	67.96	74.55
PGSC0003DMT400037472	Potato	cytosol	74.03	74.03
CDX82060	Canola	mitochondrion	68.51	73.81
CDY47746	Canola	mitochondrion	67.96	73.21
Bra008104.1-P	Field mustard	cytosol, mitochondrion	67.4	72.62
AT1G73580.1	Thale cress	mitochondrion	67.4	72.62
VIT_01s0011g05230.t01	Wine grape	cytosol	64.64	70.48
GSMUA_Achr10P...	Banana	cytosol	60.22	67.28
GSMUA_Achr6P07630_001	Banana	cytosol	61.33	66.87
GSMUA_Achr2P15950_001	Banana	cytosol	61.88	64.74
Os02t0327000-01	Rice	cytosol	56.35	61.82
TraesCS2B01G529400.1	Wheat	mitochondrion	56.91	60.59
TraesCS2A01G501300.1	Wheat	mitochondrion	56.35	60.0
TraesCS2D01G501800.2	Wheat	mitochondrion	56.35	60.0
HORVU0Hr1G039050.2	Barley	mitochondrion	55.8	59.76
EES01097	Sorghum	cytosol	54.7	59.64
Zm00001d011396_P001	Maize	cytosol	55.8	57.39
Zm00001d044179_P001	Maize	cytosol	57.46	51.74
VIT_00s0531g00030.t01	Wine grape	cytosol	38.12	41.82
VIT_10s0003g04900.t01	Wine grape	cytosol	41.99	23.03
VIT_13s0019g00350.t01	Wine grape	cytosol	41.99	19.19

Protein Annotations

EntrezGene:100261135	wikigene:100261135	MapMan:11.1.2.1.2	Gene3D:2.60.40.150	EMBL:AM439246	InterPro:C2_dom
InterPro:C2_domain_sf	ProteinID:CAN69475	ProteinID:CAN69475.1	ProteinID:CCB43285	ProteinID:CCB43285.1	UniProt:F6GSN0
EMBL:FN594950	InterPro:IPR000008	InterPro:IPR035892	EntrezGene:LOC100261135	wikigene:LOC100261135	PFAM:PF00168
PFscan:PS50004	PANTHER:PTHR23180	PANTHER:PTHR23180:SF310	SMART:SM00239	SUPFAM:SSF49562	TIGR:TC54648
TIGR:TC64357	UniParc:UPI0001985068	ArrayExpress:VIT_17s0000g02290	EnsemblPlantsGene:VIT_17s0000g02290	EnsemblPlants:VIT_17s0000g02290.t01	unigene:Vvi.3308
RefSeq:XP_002282569	RefSeq:XP_002282569.1	RefSeq:XP_010663685.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:1966603..1969851

Molecular Weight (calculated)

20433.8 Da

IEP (calculated)

7.936

GRAVY (calculated)

-0.411

Length

181 amino acids

Sequence
(BLAST)

001: MESPPKSPNR TSGTSLMENL LGLLRVRVKR GINLAVRDVR SSDPYAVIKM GKQKLKTRVM KKNVNPEWNE DLTLSISDPN LPIKLTVYDH DTFSKDDKMG
101: DAEFTINPYL EALRMHLEGL PSGTIISRVQ PSRQNCLAEE SCIVWTDGRV VQDICLRLRN VECGEVELQL QWIDLPGSKG L

Best Arabidopsis Sequence Match ( AT3G17980.1 )
(BLAST)

001: MTTACPARTS SLMDDLLGLL RIRIKRGVNL AVRDISSSDP YVVVKMGKQK LKTRVINKDV NPEWNEDLTL SVTDSNLTVL LTVYDHDMFS KDDKMGDAEF
101: EIKPYIEALR MQLDGLPSGT IVTTVKPSRR NCLAEESRVT WVDGKLVQDL VLRLRHVECG EVEAQLQWID LPGSKGL

Arabidopsis Description

CAR4Protein C2-DOMAIN ABA-RELATED 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.