Factsheet for PGSC0003DMT400074100

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068940.2.1	Tomato	cytosol	95.15	95.15
PGSC0003DMT400037472	Potato	cytosol	83.64	76.24
AT3G17980.1	Thale cress	cytosol	76.97	71.75
KRH41845	Soybean	cytosol	71.52	71.52
CDY51927	Canola	cytosol	76.36	71.19
VIT_17s0000g02290.t01	Wine grape	cytosol, plastid	76.97	70.17
CDX75953	Canola	cytosol	75.15	70.06
KRH60540	Soybean	cytosol	72.73	69.36
KRH48640	Soybean	cytosol	73.94	69.32
Bra001693.1-P	Field mustard	cytosol	73.94	68.93
CDY16452	Canola	mitochondrion	70.3	68.24
CDX77307	Canola	mitochondrion	70.3	68.24
Bra014145.1-P	Field mustard	mitochondrion	70.3	68.24
PGSC0003DMT400078786	Potato	cytosol	66.06	66.06
CDX82060	Canola	mitochondrion	66.67	65.48
CDY47746	Canola	mitochondrion	66.06	64.88
Bra008104.1-P	Field mustard	cytosol, mitochondrion	65.45	64.29
KRH39062	Soybean	cytosol	42.42	64.22
GSMUA_Achr6P07630_001	Banana	cytosol	64.24	63.86
GSMUA_Achr10P...	Banana	cytosol	62.42	63.58
AT1G73580.1	Thale cress	mitochondrion	64.24	63.1
GSMUA_Achr2P15950_001	Banana	cytosol	64.85	61.85
AT1G48590.2	Thale cress	cytosol, plasma membrane	73.94	61.0
KRH39078	Soybean	endoplasmic reticulum, extracellular	74.55	60.29
TraesCS2A01G501300.1	Wheat	mitochondrion	60.0	58.24
HORVU0Hr1G039050.2	Barley	mitochondrion	59.39	57.99
Os02t0327000-01	Rice	cytosol	57.58	57.58
EES01097	Sorghum	cytosol	56.97	56.63
TraesCS2D01G501800.2	Wheat	mitochondrion	57.58	55.88
TraesCS2B01G529400.1	Wheat	mitochondrion	57.58	55.88
PGSC0003DMT400042134	Potato	cytosol	43.64	53.33
Zm00001d011396_P001	Maize	cytosol	54.55	51.14
PGSC0003DMT400020051	Potato	cytosol	47.27	47.56
Zm00001d044179_P001	Maize	cytosol	57.58	47.26
PGSC0003DMT400059720	Potato	cytosol	46.67	46.11
PGSC0003DMT400038836	Potato	cytosol	38.18	37.28
PGSC0003DMT400034618	Potato	cytosol	37.58	36.9
PGSC0003DMT400068533	Potato	cytosol	40.0	16.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400074100	EnsemblPlantsGene:PGSC0003DMG400028799	EntrezGene:102587901	InterPro:C2_dom	InterPro:IPR000008	ncoils:Coil
PANTHER:PTHR23180	PANTHER:PTHR23180:SF310	PFAM:PF00168	PFscan:PS50004	PGSC:PGSC0003DMG400028799	RefSeq:XP_006365412.1
RefSeq:XP_015159914.1	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0002953D46	UniProt:M1CT52	MapMan:11.1.2.1.2

Description

Pollen-specific C2 domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028799]

Coordinates

chr6:+:50645472..50649293

Molecular Weight (calculated)

18809.9 Da

IEP (calculated)

5.979

GRAVY (calculated)

-0.303

Length

165 amino acids

Sequence
(BLAST)

001: MDNLLGLLRI KIKRGINLAV RDVRSSDPYV VVKMGKQKLK TRVIKKDVNP EWNEDLTLSV SDANLPVKLT VYDHDMFSMD DKMGDAEFDI KPFLDALKMN
101: LDSLPCGTVI TRATPCRANC LSEESKVTWQ DNQVVQDMCL RLRNVECGEV ELQLQWIDIP GSKRL

Best Arabidopsis Sequence Match ( AT3G17980.1 )
(BLAST)

001: MTTACPARTS SLMDDLLGLL RIRIKRGVNL AVRDISSSDP YVVVKMGKQK LKTRVINKDV NPEWNEDLTL SVTDSNLTVL LTVYDHDMFS KDDKMGDAEF
101: EIKPYIEALR MQLDGLPSGT IVTTVKPSRR NCLAEESRVT WVDGKLVQDL VLRLRHVECG EVEAQLQWID LPGSKGL

Arabidopsis Description

CAR4Protein C2-DOMAIN ABA-RELATED 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.