Factsheet for PGSC0003DMT400020051

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01540.1	PGSC0003DMT400043358	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059720	Potato	cytosol	96.95	95.21
Solyc04g007800.2.1	Tomato	cytosol	93.9	92.22
PGSC0003DMT400042134	Potato	cytosol	48.78	59.26
VIT_01s0011g05230.t01	Wine grape	cytosol	54.27	53.61
AT1G23140.1	Thale cress	cytosol, mitochondrion	53.66	53.33
AT1G70810.1	Thale cress	cytosol	53.66	53.33
Bra016185.1-P	Field mustard	cytosol	52.44	52.12
Bra024565.1-P	Field mustard	cytosol	50.61	51.88
KRG94240	Soybean	cytosol	51.22	49.7
GSMUA_Achr10P...	Banana	cytosol	48.17	48.77
KRH38191	Soybean	cytosol	52.44	47.78
KRH50393	Soybean	cytosol	49.39	47.65
PGSC0003DMT400074100	Potato	cytosol	47.56	47.27
Bra017445.1-P	Field mustard	cytosol	51.83	47.22
Bra024877.1-P	Field mustard	cytosol	51.22	46.67
PGSC0003DMT400078786	Potato	cytosol	46.95	46.67
KRG89347	Soybean	cytosol	18.9	46.27
GSMUA_Achr2P15950_001	Banana	cytosol	48.78	46.24
AT2G01540.1	Thale cress	cytosol	50.61	46.11
HORVU0Hr1G039050.2	Barley	mitochondrion	46.95	45.56
Bra026650.1-P	Field mustard	cytosol	50.0	45.56
Os02t0327000-01	Rice	cytosol	45.73	45.45
AT1G70800.1	Thale cress	cytosol	48.17	45.4
EES01097	Sorghum	cytosol	45.73	45.18
KRG94243	Soybean	cytosol, mitochondrion	47.56	44.83
TraesCS2A01G501300.1	Wheat	mitochondrion	46.34	44.71
TraesCS2D01G501800.2	Wheat	mitochondrion	46.34	44.71
TraesCS2B01G529400.1	Wheat	mitochondrion	45.73	44.12
GSMUA_Achr6P07630_001	Banana	cytosol	44.51	43.98
AT1G70790.1	Thale cress	cytosol	49.39	43.78
Bra016186.1-P	Field mustard	cytosol	49.39	43.78
PGSC0003DMT400037472	Potato	cytosol	48.17	43.65
Zm00001d011396_P001	Maize	cytosol	42.68	39.77
Zm00001d044179_P001	Maize	cytosol	46.95	38.31
PGSC0003DMT400038836	Potato	cytosol	35.98	34.91
PGSC0003DMT400034618	Potato	cytosol	34.15	33.33
Bra003941.1-P	Field mustard	cytosol	49.39	32.02
Bra003940.1-P	Field mustard	cytosol	20.73	24.29
PGSC0003DMT400068533	Potato	cytosol	39.02	16.2
CDY23476	Canola	cytosol	1.83	2.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400020051	EnsemblPlantsGene:PGSC0003DMG400007759	EntrezGene:102593804	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR23180	PANTHER:PTHR23180:SF296	PFAM:PF00168	PFscan:PS50004
PGSC:PGSC0003DMG400007759	RefSeq:XP_006367963.1	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI000296867D	UniProt:M1ACX9
MapMan:11.1.2.1.2	:	:	:	:	:

Description

ARF GTPase activator [Source:PGSC_GENE;Acc:PGSC0003DMG400007759]

Coordinates

chr00:+:33868055..33870628

Molecular Weight (calculated)

18623.7 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.277

Length

164 amino acids

Sequence
(BLAST)

001: MLGLVKIRVH RGINLPLKDT FHSDPYVVVT MGDQKVKTSC KKNNCNPVWD DELTLALKNP NVQIVLTVYD KDTFSKDDKI GEAKIDIKPY LKALEMSYHQ
101: DLPNGVKVQP NKDNCLAKES CIIWENGKLI QDMTLMLQNV ECGEVKLQIE VIPKMLSEDA FYVA

Best Arabidopsis Sequence Match ( AT1G23140.1 )
(BLAST)

001: MENLVGLLRI RVKRGINLVS RDSNTSDPFV VVTMGSQKLK TRGVENSCNP EWDDELTLGI NDPNQHVTLE VYDKDTFTSH DPMGDAEIDI KPFFEVQGTD
101: IQELTNGTEI RRVKPSGDNC LAEESRIIFS NGKILQDMIL QLRNVESGEV EIQIEWINVT GSSDF

Arabidopsis Description

CAR8Protein C2-DOMAIN ABA-RELATED 8 [Source:UniProtKB/Swiss-Prot;Acc:O49303]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.