Factsheet for Bra024877.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01540.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58016	Canola	cytosol	100.0	100.0
CDY17665	Canola	cytosol	99.44	99.44
AT2G01540.1	Thale cress	cytosol	93.89	93.89
Bra017445.1-P	Field mustard	cytosol	92.78	92.78
Bra026650.1-P	Field mustard	cytosol	91.67	91.67
VIT_01s0011g05230.t01	Wine grape	cytosol	60.56	65.66
Solyc06g053390.2.1	Tomato	cytosol, mitochondrion	57.22	61.68
Bra016186.1-P	Field mustard	cytosol	62.78	61.08
Bra016185.1-P	Field mustard	cytosol	55.56	60.61
PGSC0003DMT400042134	Potato	cytosol	44.44	59.26
Bra028147.1-P	Field mustard	cytosol	53.33	57.14
Bra018410.1-P	Field mustard	mitochondrion	52.22	55.95
KRG94240	Soybean	cytosol	52.22	55.62
Bra025441.1-P	Field mustard	cytosol	51.11	54.76
Bra028148.1-P	Field mustard	mitochondrion	51.11	54.76
KRH38191	Soybean	cytosol	54.44	54.44
Bra024565.1-P	Field mustard	cytosol	48.33	54.38
Bra004161.1-P	Field mustard	cytosol	51.67	53.14
EES01097	Sorghum	cytosol	48.89	53.01
KRH50393	Soybean	cytosol	49.44	52.35
GSMUA_Achr10P...	Banana	cytosol	46.67	51.85
PGSC0003DMT400020051	Potato	cytosol	46.67	51.22
GSMUA_Achr6P07630_001	Banana	cytosol	47.22	51.2
Bra008104.1-P	Field mustard	cytosol, mitochondrion	47.78	51.19
Bra014145.1-P	Field mustard	mitochondrion	48.33	51.18
KRG94243	Soybean	cytosol, mitochondrion	48.89	50.57
Os02t0327000-01	Rice	cytosol	46.11	50.3
PGSC0003DMT400059720	Potato	cytosol	46.11	49.7
Zm00001d011396_P001	Maize	cytosol	48.33	49.43
KRG89347	Soybean	cytosol	18.33	49.25
Solyc04g007800.2.1	Tomato	cytosol	45.56	49.1
GSMUA_Achr2P15950_001	Banana	cytosol	46.67	48.55
TraesCS2D01G501800.2	Wheat	mitochondrion	45.0	47.65
TraesCS2A01G501300.1	Wheat	mitochondrion	44.44	47.06
TraesCS2B01G529400.1	Wheat	mitochondrion	44.44	47.06
Bra001693.1-P	Field mustard	cytosol	46.11	46.89
HORVU0Hr1G039050.2	Barley	mitochondrion	43.33	46.15
Zm00001d044179_P001	Maize	cytosol	47.78	42.79
Bra003941.1-P	Field mustard	cytosol	58.89	41.9
Bra003940.1-P	Field mustard	cytosol	28.33	36.43
Bra029572.1-P	Field mustard	cytosol	38.33	25.0
Bra038783.1-P	Field mustard	cytosol	35.56	18.93
Bra040041.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	34.44	18.51
Bra024773.1-P	Field mustard	cytosol	26.67	16.55
Bra013508.1-P	Field mustard	cytosol	36.11	16.54
Bra029688.1-P	Field mustard	cytosol	33.89	15.02
Bra001277.1-P	Field mustard	cytosol	30.56	14.32

Protein Annotations

EnsemblPlants:Bra024877.1	EnsemblPlants:Bra024877.1-P	EnsemblPlantsGene:Bra024877	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR23180	PANTHER:PTHR23180:SF296	PFAM:PF00168	PFscan:PS50004
PRINTS:PR00360	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI00018C67B0	UniProt:M4E7X1
MapMan:11.1.2.1.2	:	:	:	:	:

Description

AT2G01540 (E=1e-095) | C2 domain-containing protein

Coordinates

chrA06:+:24043475..24044243

Molecular Weight (calculated)

20089.3 Da

IEP (calculated)

6.910

GRAVY (calculated)

-0.342

Length

180 amino acids

Sequence
(BLAST)

001: MDQRPLGLLT IHVKRGINLA IRDHRSSDPY VVITVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANLD IQPYLESLKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD MILRLNNVEC GEIEVMLEWH EGAGCRGITS KGVGGGSSST

Best Arabidopsis Sequence Match ( AT2G01540.1 )
(BLAST)

001: MDQKPLGLLT IHVKRGINLA IRDHRSSDPY IVLNVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANID IQPYLEALKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD LILRLNNVEC GEIEIMLEWH EGAGCRGITS SSKGGGSSST

Arabidopsis Description

CAR10Protein C2-DOMAIN ABA-RELATED 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.