CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73496
CDX78219

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01540.1	CDX73496	AT3G54220.1	19228333
AT2G01540.1	CDX78219	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024877.1-P	Field mustard	cytosol	100.0	100.0
CDY17665	Canola	cytosol	99.44	99.44
AT2G01540.1	Thale cress	cytosol	93.89	93.89
CDY04090	Canola	cytosol	92.78	92.78
CDY48816	Canola	cytosol	91.67	91.67
CDY09436	Canola	cytosol	91.67	91.67
CDY70365	Canola	cytosol	91.11	91.11
CDY11544	Canola	cytosol	63.33	61.62
CDX96278	Canola	cytosol	62.78	61.08
CDY11543	Canola	cytosol	55.56	60.61
CDX96279	Canola	cytosol	55.56	60.61
CDY23479	Canola	cytosol	58.89	57.3
CDY01709	Canola	mitochondrion	52.78	56.55
CDX74562	Canola	cytosol	52.22	56.29
CDY27005	Canola	cytosol	52.22	55.95
CDY38572	Canola	mitochondrion	52.22	55.95
CDY71117	Canola	cytosol	48.89	55.0
CDX74561	Canola	mitochondrion	51.11	54.76
CDY04742	Canola	cytosol	48.33	54.38
CDY71433	Canola	cytosol	48.33	54.38
CDX96152	Canola	cytosol	52.22	53.71
CDX99693	Canola	cytosol	50.0	53.57
EES01097	Sorghum	cytosol	48.89	53.01
CDY07499	Canola	cytosol	51.11	52.57
CDY27654	Canola	cytosol	52.22	52.51
GSMUA_Achr10P...	Banana	cytosol	46.67	51.85
GSMUA_Achr6P07630_001	Banana	cytosol	47.22	51.2
CDX82060	Canola	mitochondrion	47.78	51.19
CDY47746	Canola	mitochondrion	47.78	51.19
CDY16452	Canola	mitochondrion	48.33	51.18
CDX77307	Canola	mitochondrion	48.33	51.18
Os02t0327000-01	Rice	cytosol	46.11	50.3
Zm00001d011396_P001	Maize	cytosol	48.33	49.43
CDY51927	Canola	cytosol	47.78	48.59
GSMUA_Achr2P15950_001	Banana	cytosol	46.67	48.55
CDY23477	Canola	cytosol	33.33	48.0
TraesCS2D01G501800.2	Wheat	mitochondrion	45.0	47.65
CDX75953	Canola	cytosol	46.67	47.46
TraesCS2A01G501300.1	Wheat	mitochondrion	44.44	47.06
TraesCS2B01G529400.1	Wheat	mitochondrion	44.44	47.06
HORVU0Hr1G039050.2	Barley	mitochondrion	43.33	46.15
Zm00001d044179_P001	Maize	cytosol	47.78	42.79
CDY70119	Canola	cytosol	59.44	42.29
CDX68329	Canola	cytosol	27.78	36.23
CDY69110	Canola	cytosol	18.33	35.11
CDY40545	Canola	endoplasmic reticulum, extracellular	37.22	33.84
CDY49631	Canola	extracellular	22.22	33.33
CDY01706	Canola	golgi, mitochondrion, plasma membrane, plastid	40.56	30.93
CDX82807	Canola	cytosol	38.89	22.15
CDY21329	Canola	mitochondrion	38.33	20.47
CDY62002	Canola	mitochondrion	38.33	20.47
CDX76421	Canola	cytosol	37.22	20.36
CDY39164	Canola	cytosol, mitochondrion, nucleus	38.33	20.29
CDY46364	Canola	cytosol, mitochondrion, nucleus	38.33	20.0
CDX94026	Canola	cytosol, mitochondrion, nucleus	36.11	19.23
CDY58481	Canola	cytosol, mitochondrion, nucleus	35.56	18.93
CDY65341	Canola	plastid	37.78	18.33
CDY22145	Canola	cytosol	34.44	16.19
CDY28007	Canola	cytosol	34.44	15.27
CDY35974	Canola	cytosol	33.89	15.02
CDX74022	Canola	cytosol	30.56	14.32
CDY60369	Canola	cytosol	11.67	11.29
CDX79040	Canola	cytosol, mitochondrion, nucleus, plastid	38.89	9.93
CDY23476	Canola	cytosol	1.67	2.54

Protein Annotations

EnsemblPlants:CDY58016	EnsemblPlantsGene:GSBRNA2T00023002001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR23180	PANTHER:PTHR23180:SF296	PFAM:PF00168	PFscan:PS50004	PRINTS:PR00360
ProteinID:CDY58016	ProteinID:CDY58016.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI00018C67B0
UniProt:A0A078IZP6	MapMan:11.1.2.1.2	:	:	:	:

Description

BnaC07g48820DBnaC07g48820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZP6]

Coordinates

chrLK033626:+:7059..8156

Molecular Weight (calculated)

20089.3 Da

IEP (calculated)

6.910

GRAVY (calculated)

-0.342

Length

180 amino acids

Sequence
(BLAST)

001: MDQRPLGLLT IHVKRGINLA IRDHRSSDPY VVITVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANLD IQPYLESLKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD MILRLNNVEC GEIEVMLEWH EGAGCRGITS KGVGGGSSST

Best Arabidopsis Sequence Match ( AT2G01540.1 )
(BLAST)

001: MDQKPLGLLT IHVKRGINLA IRDHRSSDPY IVLNVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANID IQPYLEALKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD LILRLNNVEC GEIEIMLEWH EGAGCRGITS SSKGGGSSST

Arabidopsis Description

CAR10Protein C2-DOMAIN ABA-RELATED 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.