CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038783.1-P	Field mustard	cytosol	99.41	99.41
CDX94026	Canola	cytosol, mitochondrion, nucleus	96.45	96.45
AT4G21160.4	Thale cress	cytosol, mitochondrion, nucleus	89.35	89.61
CDX76421	Canola	cytosol	86.39	88.75
CDX82807	Canola	cytosol	82.84	88.61
CDY39164	Canola	cytosol, mitochondrion, nucleus	82.25	81.76
CDY46364	Canola	cytosol, mitochondrion, nucleus	83.14	81.45
CDY21329	Canola	mitochondrion	80.77	81.01
CDY62002	Canola	mitochondrion	80.18	80.42
CDY65341	Canola	plastid	87.57	79.78
VIT_10s0003g04900.t01	Wine grape	cytosol	72.49	74.24
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	70.41	71.9
KRH71995	Soybean	cytosol	21.89	67.89
Os06t0609450-01	Rice	cytosol	26.04	63.77
Os02t0198300-02	Rice	plasma membrane	58.88	62.19
KXG29722	Sorghum	cytosol	56.8	61.34
EER88634	Sorghum	cytosol	60.06	61.33
HORVU6Hr1G032940.1	Barley	cytosol	58.28	60.99
EES05611	Sorghum	cytosol	59.76	60.84
TraesCS6A01G160700.1	Wheat	cytosol	57.99	60.68
TraesCS6B01G190600.1	Wheat	cytosol	57.99	60.68
TraesCS6A01G285400.2	Wheat	golgi	58.28	59.34
Zm00001d034981_P001	Maize	cytosol	33.14	58.64
Os02t0722500-01	Rice	cytosol	56.8	57.83
TraesCS6D01G152000.1	Wheat	cytosol	57.69	57.18
GSMUA_Achr7P20210_001	Banana	cytosol	37.28	56.0
CDY69110	Canola	cytosol	15.38	55.32
CDY60369	Canola	cytosol	24.85	45.16
TraesCS6D01G265900.2	Wheat	cytosol	58.28	44.98
HORVU6Hr1G071850.3	Barley	mitochondrion	58.28	44.67
CDY22145	Canola	cytosol	48.22	42.56
TraesCS6B01G314300.1	Wheat	cytosol	56.21	42.51
CDY47746	Canola	mitochondrion	20.12	40.48
CDX82060	Canola	mitochondrion	20.12	40.48
CDX74022	Canola	cytosol	45.86	40.36
CDY35974	Canola	cytosol	47.63	39.66
Zm00001d005398_P001	Maize	cytosol	42.01	39.44
CDX79040	Canola	cytosol, mitochondrion, nucleus, plastid	82.25	39.43
CDY28007	Canola	cytosol	47.34	39.41
CDY01709	Canola	mitochondrion	19.53	39.29
CDX74561	Canola	mitochondrion	19.23	38.69
CDX74562	Canola	cytosol	18.93	38.32
CDY71117	Canola	cytosol	18.05	38.12
CDX99693	Canola	cytosol	18.93	38.1
CDX96152	Canola	cytosol	19.53	37.71
CDY07499	Canola	cytosol	19.53	37.71
CDX77307	Canola	mitochondrion	18.93	37.65
CDX96279	Canola	cytosol	18.34	37.58
CDY11543	Canola	cytosol	18.34	37.58
CDY04742	Canola	cytosol	17.75	37.5
CDY71433	Canola	cytosol	17.75	37.5
CDY16452	Canola	mitochondrion	18.64	37.06
CDY38572	Canola	mitochondrion	18.34	36.9
CDY27005	Canola	cytosol	18.34	36.9
CDY27654	Canola	cytosol	19.23	36.31
CDY51927	Canola	cytosol	18.93	36.16
CDY11544	Canola	cytosol	19.53	35.68
CDX75953	Canola	cytosol	18.64	35.59
Zm00001d007340_P001	Maize	cytosol	39.05	35.58
CDY70365	Canola	cytosol	18.93	35.56
CDY04090	Canola	cytosol	18.93	35.56
CDY58016	Canola	cytosol	18.93	35.56
CDX96278	Canola	cytosol	19.23	35.14
CDY17665	Canola	cytosol	18.64	35.0
CDY09436	Canola	cytosol	18.34	34.44
CDY48816	Canola	cytosol	18.34	34.44
CDY40545	Canola	endoplasmic reticulum, extracellular	19.82	33.84
CDY23479	Canola	cytosol	18.05	32.97
CDY49631	Canola	extracellular	10.06	28.33
CDY70119	Canola	cytosol	20.12	26.88
CDY23477	Canola	cytosol	8.58	23.2
CDY01706	Canola	golgi, mitochondrion, plasma membrane, plastid	15.38	22.03
CDX68329	Canola	cytosol	6.51	15.94
CDY23476	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	GO:A0A078J6A8	UniProt:A0A078J6A8	InterPro:ARFGAP/RecO
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDY58481	ProteinID:CDY58481
ProteinID:CDY58481.1	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00023647001	InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892
InterPro:IPR038508	PFAM:PF00168	PFAM:PF01412	PRINTS:PR00360	PRINTS:PR00405	PFscan:PS50004
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF245	SMART:SM00105	SMART:SM00239	SUPFAM:SSF49562
SUPFAM:SSF57863	UniParc:UPI0004EE3451	SEG:seg	:	:	:

Description

BnaA03g58510DBnaA03g58510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6A8]

Coordinates

chrLK033671:-:26512..28747

Molecular Weight (calculated)

37492.5 Da

IEP (calculated)

5.626

GRAVY (calculated)

-0.349

Length

338 amino acids

Sequence
(BLAST)

001: MSYSAAGHGK PGSGKRRIRE LLTQSDNRFC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDEEV DSMIEIGGND SANSIYEAFI
101: PHGFSKPGPD ASHDQRLRFI RSKYEHQEFL KPSLRITSVK APTTKTSSSY LSSSLSKKFM DSFRTNSSSQ HPQLEGMVEF IGLLKVTLKK GTNLAVRDMM
201: TSDPYVKLTL GQQTVQSTVK KSNLNPVWNE ELMLSVPHDY GSVKLQVFDY DTFSADDIMG EAGIDIQPLI TSAMAFGDPE MFGDMQIGKW LKSHDNALIE
301: DSIINIADGR VKQEVRIKLQ NVESGELELE VEWLSLES

Best Arabidopsis Sequence Match ( AT4G21160.4 )
(BLAST)

001: MSYSGAGLGK PGSGKRRIRD LLTQSDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GSHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFI
101: PEGSSKPGPD ASHDQRMRFI RSKYEHQEFL KPSLRITSVR GSSTKTPAFL SSSLSKKIVD SFRTNSSSQQ PQLEGMVEFI GLLKVTIKKG TNMAIRDMMS
201: SDPYVVLTLG QQKAQSTVVK SNLNPVWNEE LMLSVPHNYG SVKLQVFDYD TFSADDIMGE AEIDIQPLIT SAMAFGDPEM FGDMQIGKWL KSHDNALIED
301: SIINIADGKV KQEVQIKLQN VESGELELEM EWLPLEQ

Arabidopsis Description

AGD12ZAC [Source:UniProtKB/TrEMBL;Acc:A0A178UUS8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.