Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G032940.1 | Barley | cytosol | 95.67 | 95.67 |
| TraesCS6A01G160700.1 | Wheat | cytosol | 95.05 | 95.05 |
| TraesCS6D01G152000.1 | Wheat | cytosol | 95.67 | 90.62 |
| Zm00001d015804_P005 | Maize | cytosol, mitochondrion | 82.04 | 82.3 |
| KXG29722 | Sorghum | cytosol | 78.64 | 81.15 |
| Os02t0198300-02 | Rice | plasma membrane | 79.57 | 80.31 |
| GSMUA_Achr4P03900_001 | Banana | cytosol | 69.04 | 67.37 |
| GSMUA_Achr9P22350_001 | Banana | cytosol | 68.11 | 66.07 |
| Bra029572.1-P | Field mustard | cytosol | 55.73 | 65.22 |
| VIT_10s0003g04900.t01 | Wine grape | cytosol | 65.63 | 64.24 |
| KRH36796 | Soybean | cytosol | 63.16 | 62.96 |
| KRH11784 | Soybean | cytosol | 63.16 | 62.96 |
| CDX82807 | Canola | cytosol | 60.99 | 62.34 |
| Solyc02g024020.2.1 | Tomato | cytosol, mitochondrion | 62.85 | 61.33 |
| KRH71995 | Soybean | cytosol | 20.43 | 60.55 |
| AT4G21160.4 | Thale cress | cytosol, mitochondrion, nucleus | 62.54 | 59.94 |
| CDY21329 | Canola | mitochondrion | 62.54 | 59.94 |
| CDY62002 | Canola | mitochondrion | 62.54 | 59.94 |
| CDX76421 | Canola | cytosol | 60.99 | 59.88 |
| KRH42994 | Soybean | cytosol | 60.37 | 59.45 |
| KRH59111 | Soybean | cytosol | 60.06 | 59.15 |
| CDX94026 | Canola | cytosol, mitochondrion, nucleus | 61.3 | 58.58 |
| AT4G05330.1 | Thale cress | cytosol, mitochondrion, nucleus | 60.68 | 58.33 |
| CDY46364 | Canola | cytosol, mitochondrion, nucleus | 62.23 | 58.26 |
| Bra038783.1-P | Field mustard | cytosol | 60.68 | 57.99 |
| CDY58481 | Canola | cytosol, mitochondrion, nucleus | 60.68 | 57.99 |
| CDY39164 | Canola | cytosol, mitochondrion, nucleus | 60.37 | 57.35 |
| CDY65341 | Canola | plastid | 61.3 | 53.37 |
| Bra013508.1-P | Field mustard | cytosol | 55.42 | 45.55 |
| Bra024773.1-P | Field mustard | cytosol | 37.15 | 41.38 |
| TraesCS6B01G314300.1 | Wheat | cytosol | 56.97 | 41.16 |
| TraesCS1B01G251400.1 | Wheat | cytosol | 30.34 | 39.68 |
| TraesCS6B01G434600.1 | Wheat | extracellular | 19.81 | 38.32 |
| TraesCS5B01G166000.1 | Wheat | cytosol | 20.12 | 38.01 |
| TraesCS2B01G529400.1 | Wheat | mitochondrion | 19.2 | 36.47 |
| TraesCS2B01G250500.2 | Wheat | cytosol | 18.58 | 35.71 |
| TraesCS4B01G380100.1 | Wheat | cytosol | 18.58 | 35.71 |
| TraesCS2B01G280800.1 | Wheat | cytosol | 18.58 | 35.29 |
| TraesCS2B01G250600.1 | Wheat | extracellular, vacuole | 15.48 | 34.48 |
| CDY60369 | Canola | cytosol | 19.81 | 34.41 |
| TraesCS3B01G548000.1 | Wheat | cytosol | 44.27 | 30.04 |
| CDX79040 | Canola | cytosol, mitochondrion, nucleus, plastid | 60.68 | 27.8 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:22.3.4.3 | Gene3D:3.30.40.160 | InterPro:ARFGAP/RecO | InterPro:ArfGAP_dom | InterPro:ArfGAP_dom_sf |
| InterPro:C2_dom | InterPro:C2_domain_sf | ncoils:Coil | GO:GO:0003674 | GO:GO:0005096 | GO:GO:0008150 |
| GO:GO:0030234 | InterPro:IPR000008 | InterPro:IPR001164 | InterPro:IPR035892 | InterPro:IPR038508 | PFAM:PF00168 |
| PFAM:PF01412 | PRINTS:PR00405 | PFscan:PS50004 | PFscan:PS50115 | PANTHER:PTHR23180 | PANTHER:PTHR23180:SF245 |
| SMART:SM00105 | SMART:SM00239 | SUPFAM:SSF49562 | SUPFAM:SSF57863 | EnsemblPlantsGene:TraesCS6B01G190600 | EnsemblPlants:TraesCS6B01G190600.1 |
| TIGR:cd04038 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:223441731..223444193
Molecular Weight (calculated)
35107.9 Da
IEP (calculated)
5.423
GRAVY (calculated)
-0.306
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGHGDARM ASGKMAKLKE LLDRSENRIC ADCSAPDPKW ASANIGVFIC VKCSGVHRSL GTHISKVLSV TLDKWTDDEI DSMVEVGGNS QANAIYEAFL
101: PEGYRKPHPD SAQEDRQNFI KSKYELQEFL EPSLRIVSNH PSNAGKQASN SHSGSSKSEI GMVEFIGILN VKVIGGTKLA IRDVSSSDPY VVLTLGQQKA
201: QTSVIKGNLN PVWNEELKLS VPRKYGPLKL QVLDHDMVSK DDLMGEAEID LQPMINAAAS FGDPELLGDI QIGRWLKSGD NALTADSAVM VTGGKVKQEV
301: SLKLQHTESG EVTVEMEWMA LNI
101: PEGYRKPHPD SAQEDRQNFI KSKYELQEFL EPSLRIVSNH PSNAGKQASN SHSGSSKSEI GMVEFIGILN VKVIGGTKLA IRDVSSSDPY VVLTLGQQKA
201: QTSVIKGNLN PVWNEELKLS VPRKYGPLKL QVLDHDMVSK DDLMGEAEID LQPMINAAAS FGDPELLGDI QIGRWLKSGD NALTADSAVM VTGGKVKQEV
301: SLKLQHTESG EVTVEMEWMA LNI
001: MSYSGAGLGK PGSGKRRIRD LLTQSDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GSHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFI
101: PEGSSKPGPD ASHDQRMRFI RSKYEHQEFL KPSLRITSVR GSSTKTPAFL SSSLSKKIVD SFRTNSSSQQ PQLEGMVEFI GLLKVTIKKG TNMAIRDMMS
201: SDPYVVLTLG QQKAQSTVVK SNLNPVWNEE LMLSVPHNYG SVKLQVFDYD TFSADDIMGE AEIDIQPLIT SAMAFGDPEM FGDMQIGKWL KSHDNALIED
301: SIINIADGKV KQEVQIKLQN VESGELELEM EWLPLEQ
101: PEGSSKPGPD ASHDQRMRFI RSKYEHQEFL KPSLRITSVR GSSTKTPAFL SSSLSKKIVD SFRTNSSSQQ PQLEGMVEFI GLLKVTIKKG TNMAIRDMMS
201: SDPYVVLTLG QQKAQSTVVK SNLNPVWNEE LMLSVPHNYG SVKLQVFDYD TFSADDIMGE AEIDIQPLIT SAMAFGDPEM FGDMQIGKWL KSHDNALIED
301: SIINIADGKV KQEVQIKLQN VESGELELEM EWLPLEQ
Arabidopsis Description
AGD12ZAC [Source:UniProtKB/TrEMBL;Acc:A0A178UUS8]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.