Factsheet for TraesCS6D01G152000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G160700.1	Wheat	cytosol	92.38	97.52
TraesCS6B01G190600.1	Wheat	cytosol	90.62	95.67
HORVU6Hr1G032940.1	Barley	cytosol	90.62	95.67
Zm00001d015804_P005	Maize	cytosol, mitochondrion	79.18	83.85
KXG29722	Sorghum	cytosol	74.78	81.47
Os02t0198300-02	Rice	plasma membrane	75.95	80.94
GSMUA_Achr4P03900_001	Banana	cytosol	65.1	67.07
GSMUA_Achr9P22350_001	Banana	cytosol	65.4	66.97
Bra029572.1-P	Field mustard	cytosol	52.49	64.86
VIT_10s0003g04900.t01	Wine grape	cytosol	62.46	64.55
KRH36796	Soybean	cytosol	59.24	62.35
KRH11784	Soybean	cytosol	58.94	62.04
CDX82807	Canola	cytosol	57.48	62.03
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	59.82	61.63
AT4G21160.4	Thale cress	cytosol, mitochondrion, nucleus	58.94	59.64
CDY62002	Canola	mitochondrion	58.94	59.64
CDY21329	Canola	mitochondrion	58.94	59.64
KRH71995	Soybean	cytosol	19.06	59.63
CDX76421	Canola	cytosol	57.48	59.57
KRH42994	Soybean	cytosol	57.18	59.45
KRH59111	Soybean	cytosol	56.89	59.15
CDX94026	Canola	cytosol, mitochondrion, nucleus	57.77	58.28
AT4G05330.1	Thale cress	cytosol, mitochondrion, nucleus	57.18	58.04
CDY46364	Canola	cytosol, mitochondrion, nucleus	58.65	57.97
CDY58481	Canola	cytosol, mitochondrion, nucleus	57.18	57.69
Bra038783.1-P	Field mustard	cytosol	57.18	57.69
CDY39164	Canola	cytosol, mitochondrion, nucleus	56.89	57.06
CDY65341	Canola	plastid	58.36	53.64
Bra013508.1-P	Field mustard	cytosol	52.2	45.29
TraesCS6D01G265900.2	Wheat	cytosol	55.43	43.15
Bra024773.1-P	Field mustard	cytosol	35.48	41.72
TraesCS5D01G173700.1	Wheat	cytosol	19.35	38.6
TraesCS6D01G380000.1	Wheat	cytosol, extracellular	18.77	38.32
TraesCS1D01G239400.3	Wheat	cytosol	42.23	38.1
TraesCS2D01G233300.1	Wheat	cytosol	18.18	36.9
TraesCS2D01G501800.2	Wheat	mitochondrion	18.18	36.47
CDY60369	Canola	cytosol	19.06	34.95
TraesCS2D01G262500.1	Wheat	cytosol	17.3	34.71
TraesCS2D01G233200.1	Wheat	endoplasmic reticulum, extracellular	17.6	30.46
TraesCS3D01G494100.1	Wheat	cytosol	40.47	28.22
CDX79040	Canola	cytosol, mitochondrion, nucleus, plastid	57.48	27.8

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150	GO:GO:0030234
InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	PFAM:PF00168	PFAM:PF01412
PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF245	SMART:SM00105
SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863	EnsemblPlantsGene:TraesCS6D01G152000	EnsemblPlants:TraesCS6D01G152000.1	TIGR:cd04038
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:125238177..125241060

Molecular Weight (calculated)

36896.1 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.262

Length

341 amino acids

Sequence
(BLAST)

001: MTIRLGPPLD SIEGLAAEMS GGHGDAGMAS GKMAKLKELL QKSENRICAD CSAPDPNWAS ANIGVFICVK CSGVHRSVGT HISKVMSVTL DKWSDDEIDS
101: MVEVGGNSQA NAIYEAFLPE GYRKPHPDSA QEERQKFIKS KYELQEFLEP SLRIVSNHPS DAGKQASNSH SASSKSEIGM VEFIGILNVK VIGGTKLAIR
201: DMSSSDPYVV LTLGQQKAQT SVIKGNLNPV WNEELKLSVP QKYGPLKLQV LDHDMVSKDD LMGEAEIDLQ PMINAAASFG DPELLGDIQI GRWLKSGDNA
301: LTADSAVMVT GGKVKQEVTL KLQHTESGEV TVEMEWMALN I

Best Arabidopsis Sequence Match ( AT4G21160.4 )
(BLAST)

001: MSYSGAGLGK PGSGKRRIRD LLTQSDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GSHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFI
101: PEGSSKPGPD ASHDQRMRFI RSKYEHQEFL KPSLRITSVR GSSTKTPAFL SSSLSKKIVD SFRTNSSSQQ PQLEGMVEFI GLLKVTIKKG TNMAIRDMMS
201: SDPYVVLTLG QQKAQSTVVK SNLNPVWNEE LMLSVPHNYG SVKLQVFDYD TFSADDIMGE AEIDIQPLIT SAMAFGDPEM FGDMQIGKWL KSHDNALIED
301: SIINIADGKV KQEVQIKLQN VESGELELEM EWLPLEQ

Arabidopsis Description

AGD12ZAC [Source:UniProtKB/TrEMBL;Acc:A0A178UUS8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.