CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029572.1-P	Field mustard	cytosol	80.88	99.64
CDY46364	Canola	cytosol, mitochondrion, nucleus	98.82	97.39
CDY62002	Canola	mitochondrion	92.65	93.47
CDY21329	Canola	mitochondrion	92.35	93.18
AT4G05330.1	Thale cress	cytosol, mitochondrion, nucleus	89.12	90.18
CDX76421	Canola	cytosol	80.0	82.67
CDY58481	Canola	cytosol, mitochondrion, nucleus	81.76	82.25
CDX94026	Canola	cytosol, mitochondrion, nucleus	81.47	81.95
CDX82807	Canola	cytosol	73.53	79.11
CDY65341	Canola	plastid	81.47	74.66
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	72.35	74.32
VIT_10s0003g04900.t01	Wine grape	cytosol	70.59	72.73
KRH71995	Soybean	cytosol	21.18	66.06
Os06t0609450-01	Rice	cytosol	26.76	65.94
KXG29722	Sorghum	cytosol	56.47	61.34
HORVU6Hr1G032940.1	Barley	cytosol	57.94	60.99
Os02t0198300-02	Rice	plasma membrane	57.35	60.94
TraesCS6A01G285400.2	Wheat	golgi	59.12	60.54
TraesCS6B01G190600.1	Wheat	cytosol	57.35	60.37
TraesCS6A01G160700.1	Wheat	cytosol	57.35	60.37
EER88634	Sorghum	cytosol	58.53	60.12
EES05611	Sorghum	cytosol	58.24	59.64
Os02t0722500-01	Rice	cytosol	57.35	58.73
TraesCS6D01G152000.1	Wheat	cytosol	57.06	56.89
Zm00001d034981_P001	Maize	cytosol	31.47	56.02
CDY69110	Canola	cytosol	14.71	53.19
GSMUA_Achr7P20210_001	Banana	cytosol	34.41	52.0
CDY60369	Canola	cytosol	27.65	50.54
TraesCS6D01G265900.2	Wheat	cytosol	59.12	45.89
CDY01709	Canola	mitochondrion	22.65	45.83
HORVU6Hr1G071850.3	Barley	mitochondrion	58.82	45.35
CDX74562	Canola	cytosol	22.06	44.91
CDX74561	Canola	mitochondrion	22.06	44.64
TraesCS6B01G314300.1	Wheat	cytosol	57.06	43.4
CDX82060	Canola	mitochondrion	21.18	42.86
CDY27005	Canola	cytosol	21.18	42.86
CDY38572	Canola	mitochondrion	21.18	42.86
CDY47746	Canola	mitochondrion	21.18	42.86
CDY22145	Canola	cytosol	48.24	42.82
CDY71117	Canola	cytosol	20.0	42.5
CDX99693	Canola	cytosol	20.88	42.26
CDY71433	Canola	cytosol	19.71	41.88
CDY04742	Canola	cytosol	19.71	41.88
CDX77307	Canola	mitochondrion	20.88	41.76
CDY27654	Canola	cytosol	21.76	41.34
CDX96279	Canola	cytosol	20.0	41.21
CDY11543	Canola	cytosol	20.0	41.21
CDY16452	Canola	mitochondrion	20.59	41.18
CDX74022	Canola	cytosol	45.59	40.36
CDY51927	Canola	cytosol	20.88	40.11
CDY11544	Canola	cytosol	21.76	40.0
CDY07499	Canola	cytosol	20.59	40.0
CDX96152	Canola	cytosol	20.59	40.0
CDY28007	Canola	cytosol	47.35	39.66
CDX96278	Canola	cytosol	21.47	39.46
CDY35974	Canola	cytosol	47.06	39.41
CDX75953	Canola	cytosol	20.29	38.98
CDY58016	Canola	cytosol	20.29	38.33
Zm00001d005398_P001	Maize	cytosol	40.0	37.78
CDY17665	Canola	cytosol	20.0	37.78
CDY04090	Canola	cytosol	19.41	36.67
CDY70365	Canola	cytosol	19.41	36.67
CDY48816	Canola	cytosol	19.12	36.11
CDY09436	Canola	cytosol	19.12	36.11
CDY40545	Canola	endoplasmic reticulum, extracellular	20.88	35.86
CDX79040	Canola	cytosol, mitochondrion, nucleus, plastid	73.53	35.46
CDY23479	Canola	cytosol	19.12	35.14
Zm00001d007340_P001	Maize	cytosol	37.35	34.23
CDY49631	Canola	extracellular	10.59	30.0
CDY70119	Canola	cytosol	21.76	29.25
CDY23477	Canola	cytosol	9.41	25.6
CDY01706	Canola	golgi, mitochondrion, plasma membrane, plastid	17.65	25.42
CDX68329	Canola	cytosol	6.47	15.94
CDY23476	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	GO:A0A078HP39	UniProt:A0A078HP39	InterPro:ARFGAP/RecO
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDY39164	ProteinID:CDY39164
ProteinID:CDY39164.1	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00067347001	InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892
InterPro:IPR038508	PFAM:PF00168	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF245	SMART:SM00105	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863
UniParc:UPI0004EDCDE9	SEG:seg	:	:	:	:

Description

BnaC09g21800DBnaC09g21800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP39]

Coordinates

chrLK032442:-:51999..54325

Molecular Weight (calculated)

37712.1 Da

IEP (calculated)

5.278

GRAVY (calculated)

-0.344

Length

340 amino acids

Sequence
(BLAST)

001: MSNYSAGLGK PGSGKRRIRD LLNQPDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDDWSDEEV DSMIEIGGNA SANSIYEAFV
101: PEGSSKPGPD VSHDQRLRFI RQAYSTRRQK FLKPSLRITS GKTTSTKKPP SFLSSSLSTK FMDSFRTNSS SKKIFEEGMV EFIGLLKVTV KKGTNLAIRD
201: MMSSDPYVVL NLGKQKLQTT VVNSNLNPVW NQELMLSVPE SYGPVKLQVY DYDTFSADDI MGEAELDIQP LITSAMAFGD PEMFGDMQIG KWLKSHDNPL
301: IDDSIINIVD GKVKQEVQIK LQNVESGELE LEMEWLPLEQ

Best Arabidopsis Sequence Match ( AT4G05330.3 )
(BLAST)

001: MSNYAAGLGK PGSGKRRIRD LLNQPDNRVC ADCGASDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFL
101: PDTCSKPGPD VNHDQRMRFI RAKYELQEFL KPSLRITSGK GSTKSSAFLT SSLSRKIMDS FRTNSSSQTM FQEGMVEFIG LLKVTIKKGT NLAIRDMMSS
201: DPYVVLNLGK QKLQTTVMNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS
301: IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ

Arabidopsis Description

AGD13AGD13 [Source:UniProtKB/TrEMBL;Acc:A0A178V602]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.