CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82807	Canola	cytosol	44.11	98.42
CDX76421	Canola	cytosol	39.43	84.5
AT4G21160.4	Thale cress	cytosol, mitochondrion, nucleus	39.86	83.38
CDY58481	Canola	cytosol, mitochondrion, nucleus	39.43	82.25
CDX94026	Canola	cytosol, mitochondrion, nucleus	39.29	81.95
CDY65341	Canola	plastid	40.0	76.01
CDY21329	Canola	mitochondrion	36.31	75.96
CDY62002	Canola	mitochondrion	36.17	75.67
CDY46364	Canola	cytosol, mitochondrion, nucleus	36.45	74.49
CDY39164	Canola	cytosol, mitochondrion, nucleus	35.46	73.53
Bra013508.1-P	Field mustard	cytosol	39.72	71.25
VIT_10s0003g04900.t01	Wine grape	cytosol	33.33	71.21
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	32.77	69.79
KRH71995	Soybean	cytosol	10.35	66.97
Os06t0609450-01	Rice	cytosol	13.05	66.67
EER88634	Sorghum	cytosol	29.22	62.24
Os02t0198300-02	Rice	plasma membrane	27.66	60.94
HORVU6Hr1G032940.1	Barley	cytosol	27.8	60.68
TraesCS6A01G160700.1	Wheat	cytosol	27.8	60.68
TraesCS6B01G190600.1	Wheat	cytosol	27.8	60.68
KXG29722	Sorghum	cytosol	26.67	60.06
EES05611	Sorghum	cytosol	27.66	58.73
TraesCS6A01G285400.2	Wheat	golgi	27.38	58.13
TraesCS6D01G152000.1	Wheat	cytosol	27.8	57.48
Os02t0722500-01	Rice	cytosol	26.67	56.63
Zm00001d034981_P001	Maize	cytosol	15.04	55.5
CDY69110	Canola	cytosol	7.09	53.19
GSMUA_Achr7P20210_001	Banana	cytosol	16.74	52.44
TraesCS6D01G265900.2	Wheat	cytosol	27.38	44.06
HORVU6Hr1G071850.3	Barley	mitochondrion	27.38	43.76
CDY22145	Canola	cytosol	22.98	42.3
CDY47746	Canola	mitochondrion	10.07	42.26
CDX82060	Canola	mitochondrion	10.07	42.26
CDY01709	Canola	mitochondrion	9.93	41.67
TraesCS6B01G314300.1	Wheat	cytosol	26.1	41.16
CDX74561	Canola	mitochondrion	9.79	41.07
CDY60369	Canola	cytosol	10.78	40.86
CDX74562	Canola	cytosol	9.65	40.72
CDX99693	Canola	cytosol	9.65	40.48
CDX74022	Canola	cytosol	21.84	40.1
CDX77307	Canola	mitochondrion	9.65	40.0
CDY16452	Canola	mitochondrion	9.5	39.41
CDX96279	Canola	cytosol	9.22	39.39
CDY11543	Canola	cytosol	9.22	39.39
CDY71117	Canola	cytosol	8.94	39.38
CDY27005	Canola	cytosol	9.36	39.29
CDY38572	Canola	mitochondrion	9.36	39.29
CDY27654	Canola	cytosol	9.93	39.11
CDY51927	Canola	cytosol	9.79	38.98
CDY11544	Canola	cytosol	10.21	38.92
CDY70365	Canola	cytosol	9.93	38.89
CDY04090	Canola	cytosol	9.93	38.89
CDY58016	Canola	cytosol	9.93	38.89
CDY04742	Canola	cytosol	8.79	38.75
CDY71433	Canola	cytosol	8.79	38.75
CDY35974	Canola	cytosol	22.13	38.42
CDX75953	Canola	cytosol	9.65	38.42
CDX96278	Canola	cytosol	10.07	38.38
CDY17665	Canola	cytosol	9.79	38.33
CDY07499	Canola	cytosol	9.5	38.29
CDX96152	Canola	cytosol	9.5	38.29
CDY28007	Canola	cytosol	21.99	38.18
CDY48816	Canola	cytosol	9.65	37.78
CDY09436	Canola	cytosol	9.65	37.78
Zm00001d005398_P001	Maize	cytosol	19.01	37.22
CDY23479	Canola	cytosol	9.36	35.68
CDY40545	Canola	endoplasmic reticulum, extracellular	9.65	34.34
Zm00001d007340_P001	Maize	cytosol	17.59	33.42
CDY49631	Canola	extracellular	5.25	30.83
CDY70119	Canola	cytosol	10.21	28.46
CDY23477	Canola	cytosol	4.68	26.4
CDY01706	Canola	golgi, mitochondrion, plasma membrane, plastid	7.94	23.73
CDX68329	Canola	cytosol	3.55	18.12
CDY23476	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	GO:A0A078CQC8	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDX79040	ProteinID:CDX79040	ProteinID:CDX79040.1
GO:GO:0003674	GO:GO:0005096	GO:GO:0008150	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00131571001	InterPro:IPR000008
InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	PFAM:PF00168	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF245	SMART:SM00105	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF57863	UniParc:UPI0004EE1729	SEG:seg	:	:

Description

BnaA01g11070D

Coordinates

chrLK031816:+:1461909..1476720

Molecular Weight (calculated)

78339.9 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.253

Length

705 amino acids

Sequence
(BLAST)

001: MSYSAAGQGK NSSGKRRISD LLTQSDNRVC ADCSAPDPNW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDDEV DSMIEIGGNA SANSVYEAFI
101: PDGVSKPGPD ASHDQRMQFI RSKYEHQEFL KPSLRITSVK GSNSSSSQQP HLEGMVEFIG LLKVTLKKGT NLAVRDTRTS DSYVVLTLGQ QTAKSTVMKS
201: NLNPVWNEEL MLSVPHDYGS VKLQVFDYDA FSGDDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SRDNALIEDS IINIADGKVK QEVHIKLQNV
301: ESGELELELE WLLGSVHDSK GTIFVGSVSF VRWTQNTVSP SSSIEQVEIC LNIHHYGGSY MDHVSPWRGF LFQFCSSDLY RLWVIRQFQK ITEFQFSKRR
401: IRDLLTQSDN RICADCGAPD PKWASANIGV FICLKCCGVH RSLGTHISKV LSVTLDEWSD DEVDSMIEIG GNASANSIYE AFIPDGVSKP GPDASHDQRM
501: RFIRSKYEHQ EYLKPSLRIT SVKGPNSSSS QQPVKSSFPH LEGMVEFIGL LKVTLKKGTN LAVRDMRTSD AYVVLTLGQQ TAQSTVMKSN LNPVWNEELM
601: LYVPHDYGSV KLQVFDYDTF SADDIMGEAG IDIQPLITSV MAFGDPEMFG DMQIGKWLKS CDNALIEDSI INIVDGKVKQ EVHIQLQNVE SGELELELEW
701: LPLDQ

Best Arabidopsis Sequence Match ( AT4G05330.3 )
(BLAST)

001: MSNYAAGLGK PGSGKRRIRD LLNQPDNRVC ADCGASDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFL
101: PDTCSKPGPD VNHDQRMRFI RAKYELQEFL KPSLRITSGK GSTKSSAFLT SSLSRKIMDS FRTNSSSQTM FQEGMVEFIG LLKVTIKKGT NLAIRDMMSS
201: DPYVVLNLGK QKLQTTVMNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS
301: IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ

Arabidopsis Description

AGD13AGD13 [Source:UniProtKB/TrEMBL;Acc:A0A178V602]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.