Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029572.1-P | Field mustard | cytosol | 80.0 | 100.0 |
| CDY39164 | Canola | cytosol, mitochondrion, nucleus | 97.39 | 98.82 |
| CDY62002 | Canola | mitochondrion | 93.04 | 95.25 |
| CDY21329 | Canola | mitochondrion | 92.75 | 94.96 |
| AT4G05330.1 | Thale cress | cytosol, mitochondrion, nucleus | 89.86 | 92.26 |
| CDX76421 | Canola | cytosol | 80.29 | 84.19 |
| CDY58481 | Canola | cytosol, mitochondrion, nucleus | 81.45 | 83.14 |
| CDX94026 | Canola | cytosol, mitochondrion, nucleus | 81.16 | 82.84 |
| CDX82807 | Canola | cytosol | 74.49 | 81.33 |
| CDY65341 | Canola | plastid | 82.32 | 76.55 |
| Solyc02g024020.2.1 | Tomato | cytosol, mitochondrion | 72.75 | 75.83 |
| VIT_10s0003g04900.t01 | Wine grape | cytosol | 71.88 | 75.15 |
| KRH71995 | Soybean | cytosol | 20.87 | 66.06 |
| Os06t0609450-01 | Rice | cytosol | 26.38 | 65.94 |
| KXG29722 | Sorghum | cytosol | 57.39 | 63.26 |
| Os02t0198300-02 | Rice | plasma membrane | 58.26 | 62.81 |
| HORVU6Hr1G032940.1 | Barley | cytosol | 58.55 | 62.54 |
| TraesCS6B01G190600.1 | Wheat | cytosol | 58.26 | 62.23 |
| TraesCS6A01G160700.1 | Wheat | cytosol | 58.26 | 62.23 |
| EER88634 | Sorghum | cytosol | 59.42 | 61.93 |
| TraesCS6A01G285400.2 | Wheat | golgi | 59.42 | 61.75 |
| EES05611 | Sorghum | cytosol | 58.26 | 60.54 |
| Os02t0722500-01 | Rice | cytosol | 57.39 | 59.64 |
| TraesCS6D01G152000.1 | Wheat | cytosol | 57.97 | 58.65 |
| Zm00001d034981_P001 | Maize | cytosol | 31.88 | 57.59 |
| GSMUA_Achr7P20210_001 | Banana | cytosol | 35.36 | 54.22 |
| CDY60369 | Canola | cytosol | 28.99 | 53.76 |
| CDY69110 | Canola | cytosol | 14.49 | 53.19 |
| TraesCS6D01G265900.2 | Wheat | cytosol | 59.42 | 46.8 |
| HORVU6Hr1G071850.3 | Barley | mitochondrion | 59.13 | 46.26 |
| CDY01709 | Canola | mitochondrion | 22.32 | 45.83 |
| CDX74562 | Canola | cytosol | 21.74 | 44.91 |
| CDX74561 | Canola | mitochondrion | 21.74 | 44.64 |
| TraesCS6B01G314300.1 | Wheat | cytosol | 57.1 | 44.07 |
| CDY22145 | Canola | cytosol | 48.7 | 43.86 |
| CDY27005 | Canola | cytosol | 20.87 | 42.86 |
| CDX82060 | Canola | mitochondrion | 20.87 | 42.86 |
| CDY38572 | Canola | mitochondrion | 20.87 | 42.86 |
| CDY47746 | Canola | mitochondrion | 20.87 | 42.86 |
| CDY71117 | Canola | cytosol | 19.71 | 42.5 |
| CDX99693 | Canola | cytosol | 20.58 | 42.26 |
| CDY71433 | Canola | cytosol | 19.42 | 41.88 |
| CDY04742 | Canola | cytosol | 19.42 | 41.88 |
| CDX77307 | Canola | mitochondrion | 20.58 | 41.76 |
| CDX74022 | Canola | cytosol | 46.09 | 41.41 |
| CDY27654 | Canola | cytosol | 21.45 | 41.34 |
| CDX96279 | Canola | cytosol | 19.71 | 41.21 |
| CDY11543 | Canola | cytosol | 19.71 | 41.21 |
| CDY16452 | Canola | mitochondrion | 20.29 | 41.18 |
| CDY28007 | Canola | cytosol | 47.83 | 40.64 |
| CDY35974 | Canola | cytosol | 47.54 | 40.39 |
| CDY51927 | Canola | cytosol | 20.58 | 40.11 |
| CDX96152 | Canola | cytosol | 20.29 | 40.0 |
| CDY11544 | Canola | cytosol | 21.45 | 40.0 |
| CDY07499 | Canola | cytosol | 20.29 | 40.0 |
| CDX96278 | Canola | cytosol | 21.16 | 39.46 |
| CDX75953 | Canola | cytosol | 20.0 | 38.98 |
| Zm00001d005398_P001 | Maize | cytosol | 40.29 | 38.61 |
| CDY58016 | Canola | cytosol | 20.0 | 38.33 |
| CDY17665 | Canola | cytosol | 19.71 | 37.78 |
| CDY70365 | Canola | cytosol | 19.13 | 36.67 |
| CDY04090 | Canola | cytosol | 19.13 | 36.67 |
| CDX79040 | Canola | cytosol, mitochondrion, nucleus, plastid | 74.49 | 36.45 |
| CDY09436 | Canola | cytosol | 18.84 | 36.11 |
| CDY48816 | Canola | cytosol | 18.84 | 36.11 |
| CDY40545 | Canola | endoplasmic reticulum, extracellular | 20.58 | 35.86 |
| CDY23479 | Canola | cytosol | 18.84 | 35.14 |
| Zm00001d007340_P001 | Maize | cytosol | 37.68 | 35.04 |
| CDY49631 | Canola | extracellular | 10.43 | 30.0 |
| CDY70119 | Canola | cytosol | 21.74 | 29.64 |
| CDY23477 | Canola | cytosol | 9.28 | 25.6 |
| CDY01706 | Canola | golgi, mitochondrion, plasma membrane, plastid | 17.39 | 25.42 |
| CDX68329 | Canola | cytosol | 6.38 | 15.94 |
| CDY23476 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:22.3.4.3 | Gene3D:3.30.40.160 | GO:A0A078IAN4 | UniProt:A0A078IAN4 | InterPro:ARFGAP/RecO |
| InterPro:ArfGAP_dom | InterPro:ArfGAP_dom_sf | InterPro:C2_dom | InterPro:C2_domain_sf | EnsemblPlants:CDY46364 | ProteinID:CDY46364 |
| ProteinID:CDY46364.1 | GO:GO:0003674 | GO:GO:0005096 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0030234 |
| GO:GO:0043547 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00083812001 | InterPro:IPR000008 | InterPro:IPR001164 | InterPro:IPR035892 |
| InterPro:IPR038508 | PFAM:PF00168 | PFAM:PF01412 | PRINTS:PR00405 | PFscan:PS50004 | PFscan:PS50115 |
| PANTHER:PTHR23180 | PANTHER:PTHR23180:SF245 | SMART:SM00105 | SMART:SM00239 | SUPFAM:SSF49562 | SUPFAM:SSF57863 |
| UniParc:UPI0004EDD55D | SEG:seg | : | : | : | : |
Description
BnaA09g19780DBnaA09g19780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAN4]
Coordinates
chrLK032664:+:50729..52947
Molecular Weight (calculated)
38309.7 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.357
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNYSAGLGK PGSGKRRIRD LLNQPDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDDWSDEEV DSMIEIGGNA SANSIYEAFV
101: PEGSSKPGPD VSHDQRMRFI RQAYSTRQSK YELQEFLKPS LRITSGKTTS TKKPPSFLSS SLSTKFMDSF RTNSSSKKIF EEGMVEFIGL LKVTVKKGTN
201: LAIRDMMSSD PYVVLNLGKQ KLQTTVVNSN LNPVWNQELM LSVPESYGPV KLQVYDYDTF SADDIMGEAE LDIQPLITSA MAFGDPEMFG DMQIGKWLKS
301: HDNPLIDDSI INIVDGKVKQ EVQIKLQNVE SGELELEMEW LPLDQ
101: PEGSSKPGPD VSHDQRMRFI RQAYSTRQSK YELQEFLKPS LRITSGKTTS TKKPPSFLSS SLSTKFMDSF RTNSSSKKIF EEGMVEFIGL LKVTVKKGTN
201: LAIRDMMSSD PYVVLNLGKQ KLQTTVVNSN LNPVWNQELM LSVPESYGPV KLQVYDYDTF SADDIMGEAE LDIQPLITSA MAFGDPEMFG DMQIGKWLKS
301: HDNPLIDDSI INIVDGKVKQ EVQIKLQNVE SGELELEMEW LPLDQ
001: MSNYAAGLGK PGSGKRRIRD LLNQPDNRVC ADCGASDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFL
101: PDTCSKPGPD VNHDQRMRFI RAKYELQEFL KPSLRITSGK GSTKSSAFLT SSLSRKIMDS FRTNSSSQTM FQEGMVEFIG LLKVTIKKGT NLAIRDMMSS
201: DPYVVLNLGK QKLQTTVMNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS
301: IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ
101: PDTCSKPGPD VNHDQRMRFI RAKYELQEFL KPSLRITSGK GSTKSSAFLT SSLSRKIMDS FRTNSSSQTM FQEGMVEFIG LLKVTIKKGT NLAIRDMMSS
201: DPYVVLNLGK QKLQTTVMNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS
301: IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ
Arabidopsis Description
AGD13AGD13 [Source:UniProtKB/TrEMBL;Acc:A0A178V602]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.