Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029572.1-P | Field mustard | cytosol | 78.57 | 95.65 |
| CDY46364 | Canola | cytosol, mitochondrion, nucleus | 92.26 | 89.86 |
| CDY21329 | Canola | mitochondrion | 89.88 | 89.61 |
| CDY62002 | Canola | mitochondrion | 89.58 | 89.32 |
| CDY39164 | Canola | cytosol, mitochondrion, nucleus | 90.18 | 89.12 |
| AT4G21160.4 | Thale cress | cytosol, mitochondrion, nucleus | 86.61 | 86.35 |
| Solyc02g024020.2.1 | Tomato | cytosol, mitochondrion | 73.21 | 74.32 |
| VIT_10s0003g04900.t01 | Wine grape | cytosol | 72.02 | 73.33 |
| Os06t0609450-01 | Rice | cytosol | 26.79 | 65.22 |
| KRH71995 | Soybean | cytosol | 20.83 | 64.22 |
| Os02t0198300-02 | Rice | plasma membrane | 58.93 | 61.88 |
| KXG29722 | Sorghum | cytosol | 57.44 | 61.66 |
| TraesCS6A01G285400.2 | Wheat | golgi | 60.71 | 61.45 |
| HORVU6Hr1G032940.1 | Barley | cytosol | 58.63 | 60.99 |
| EER88634 | Sorghum | cytosol | 59.82 | 60.73 |
| TraesCS6A01G160700.1 | Wheat | cytosol | 58.33 | 60.68 |
| TraesCS6B01G190600.1 | Wheat | cytosol | 58.33 | 60.68 |
| EES05611 | Sorghum | cytosol | 59.52 | 60.24 |
| Os02t0722500-01 | Rice | cytosol | 58.33 | 59.04 |
| Zm00001d034981_P001 | Maize | cytosol | 33.04 | 58.12 |
| TraesCS6D01G152000.1 | Wheat | cytosol | 58.04 | 57.18 |
| GSMUA_Achr7P20210_001 | Banana | cytosol | 36.31 | 54.22 |
| TraesCS6D01G265900.2 | Wheat | cytosol | 60.71 | 46.58 |
| HORVU6Hr1G071850.3 | Barley | mitochondrion | 60.42 | 46.03 |
| AT3G07940.1 | Thale cress | cytosol | 50.3 | 43.9 |
| TraesCS6B01G314300.1 | Wheat | cytosol | 58.33 | 43.85 |
| AT5G37740.2 | Thale cress | cytosol | 22.02 | 41.57 |
| AT1G66360.1 | Thale cress | cytosol | 21.43 | 41.38 |
| AT1G73580.1 | Thale cress | mitochondrion | 20.54 | 41.07 |
| AT3G17980.1 | Thale cress | cytosol | 21.43 | 40.68 |
| AT1G70810.1 | Thale cress | cytosol | 19.94 | 40.61 |
| AT5G47710.1 | Thale cress | cytosol | 19.35 | 39.16 |
| Zm00001d005398_P001 | Maize | cytosol | 41.37 | 38.61 |
| AT1G70800.1 | Thale cress | cytosol | 19.94 | 38.51 |
| AT1G23140.1 | Thale cress | cytosol, mitochondrion | 18.75 | 38.18 |
| AT1G70790.1 | Thale cress | cytosol | 20.54 | 37.3 |
| AT2G01540.1 | Thale cress | cytosol | 19.94 | 37.22 |
| Zm00001d007340_P001 | Maize | cytosol | 38.69 | 35.04 |
| AT1G48590.2 | Thale cress | cytosol, plasma membrane | 20.83 | 35.0 |
Protein Annotations
| Gene3D:2.60.40.150 | MapMan:22.3.4.3 | Gene3D:3.30.40.160 | EntrezGene:825881 | UniProt:A0A178V602 | ProteinID:AEE82506.1 |
| Symbol:AGD13 | ProteinID:ANM66129.1 | InterPro:ARFGAP/RecO | ArrayExpress:AT4G05330 | EnsemblPlantsGene:AT4G05330 | RefSeq:AT4G05330 |
| TAIR:AT4G05330 | RefSeq:AT4G05330-TAIR-G | EnsemblPlants:AT4G05330.1 | TAIR:AT4G05330.1 | EMBL:AY084733 | InterPro:ArfGAP_dom |
| InterPro:ArfGAP_dom_sf | Unigene:At.33860 | EMBL:BT024733 | InterPro:C2_dom | InterPro:C2_domain_sf | ProteinID:CAB81075.1 |
| GO:GO:0003674 | GO:GO:0005096 | GO:GO:0005488 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009555 |
| GO:GO:0030234 | GO:GO:0043547 | GO:GO:0046872 | InterPro:IPR000008 | InterPro:IPR001164 | InterPro:IPR035892 |
| InterPro:IPR038508 | RefSeq:NP_001328044.1 | RefSeq:NP_567292.1 | ProteinID:OAP01118.1 | PFAM:PF00168 | PFAM:PF01412 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00405 | PFscan:PS50004 |
| PFscan:PS50115 | PANTHER:PTHR23180 | PANTHER:PTHR23180:SF245 | UniProt:Q8LFN9 | SMART:SM00105 | SMART:SM00239 |
| SUPFAM:SSF49562 | SUPFAM:SSF57863 | UniParc:UPI000005EC18 | : | : | : |
Description
AGD13AGD13 [Source:UniProtKB/TrEMBL;Acc:A0A178V602]
Coordinates
chr4:-:2720510..2723214
Molecular Weight (calculated)
37281.6 Da
IEP (calculated)
4.727
GRAVY (calculated)
-0.291
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNYAAGLGK PGSGKRRIRD LLNQPDNRVC ADCGASDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFL
101: PDTCSKPGPD VNHDQRMRFI RAKYELQEFL KPSLRITSGK GSTKSSAFLT SSLSRKIMDS FRTNSSSQTM FQEGMVEFIG LLKVTIKKGT NLAIRDMMSS
201: DPYVVLNLGK QKLQTTVMNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS
301: IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ
101: PDTCSKPGPD VNHDQRMRFI RAKYELQEFL KPSLRITSGK GSTKSSAFLT SSLSRKIMDS FRTNSSSQTM FQEGMVEFIG LLKVTIKKGT NLAIRDMMSS
201: DPYVVLNLGK QKLQTTVMNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS
301: IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.