Factsheet for TraesCS6A01G285400.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05611	Sorghum	cytosol	82.83	82.83
Zm00001d017881_P001	Maize	cytosol	82.53	82.53
Os02t0722500-01	Rice	cytosol	81.02	81.02
TraesCS6D01G265900.2	Wheat	cytosol	99.7	75.57
HORVU6Hr1G071850.3	Barley	mitochondrion	95.78	72.11
Zm00001d051676_P007	Maize	endoplasmic reticulum, golgi	73.19	71.47
TraesCS6B01G314300.1	Wheat	cytosol	95.78	71.14
GSMUA_Achr9P12760_001	Banana	cytosol	66.57	67.17
Bra029572.1-P	Field mustard	cytosol	54.82	65.94
GSMUA_Achr9P27900_001	Banana	cytosol	67.47	64.55
VIT_10s0003g04900.t01	Wine grape	cytosol	63.55	63.94
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	62.05	62.24
CDX82807	Canola	cytosol	59.04	62.03
CDX76421	Canola	cytosol	61.14	61.7
KRH11784	Soybean	cytosol	59.94	61.42
KRH36796	Soybean	cytosol	59.94	61.42
CDY62002	Canola	mitochondrion	61.75	60.83
CDY21329	Canola	mitochondrion	61.75	60.83
AT4G05330.1	Thale cress	cytosol, mitochondrion, nucleus	61.45	60.71
AT4G21160.4	Thale cress	cytosol, mitochondrion, nucleus	61.45	60.53
KRH59111	Soybean	cytosol	59.04	59.76
CDY46364	Canola	cytosol, mitochondrion, nucleus	61.75	59.42
CDX94026	Canola	cytosol, mitochondrion, nucleus	60.24	59.17
KRH42994	Soybean	cytosol	58.43	59.15
CDY39164	Canola	cytosol, mitochondrion, nucleus	60.54	59.12
CDY58481	Canola	cytosol, mitochondrion, nucleus	59.34	58.28
Bra038783.1-P	Field mustard	cytosol	59.34	58.28
TraesCS6A01G160700.1	Wheat	cytosol	56.33	57.89
KRH71995	Soybean	cytosol	18.67	56.88
CDY65341	Canola	plastid	61.75	55.26
Bra013508.1-P	Field mustard	cytosol	55.72	47.07
TraesCS2A01G261500.1	Wheat	cytosol	20.78	42.86
Bra024773.1-P	Field mustard	cytosol	37.05	42.41
TraesCS2A01G501300.1	Wheat	mitochondrion	20.48	40.0
TraesCS5A01G546300.1	Wheat	cytosol	20.18	39.88
TraesCS2A01G229100.1	Wheat	cytosol	19.88	39.29
TraesCS5A01G169300.1	Wheat	cytosol	19.88	38.6
TraesCS6A01G394700.1	Wheat	cytosol, endoplasmic reticulum	18.67	37.13
TraesCS2A01G229200.1	Wheat	endoplasmic reticulum, extracellular	18.07	36.14
TraesCS1A01G239200.1	Wheat	cytosol	39.76	35.2
TraesCS2A01G261400.1	Wheat	cytosol	17.77	34.71
CDY60369	Canola	cytosol	18.67	33.33
CDX79040	Canola	cytosol, mitochondrion, nucleus, plastid	58.13	27.38

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150	GO:GO:0030234
InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	PFAM:PF00168	PFAM:PF01412
PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF291	SMART:SM00105
SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863	EnsemblPlantsGene:TraesCS6A01G285400	EnsemblPlants:TraesCS6A01G285400.2	SEG:seg

Description

No Description!

Coordinates

chr6A:-:516677182..516680178

Molecular Weight (calculated)

36900.8 Da

IEP (calculated)

5.282

GRAVY (calculated)

-0.410

Length

332 amino acids

Sequence
(BLAST)

001: MSAANRSQPI KLNRPVVGKA RKLKDLMLKS DNRVCADCSA PDPKWASSNI GVFLCLKCGD VHRALGQDIS NVLSLTLDDW SDSDIDSMIE VGGNSYANSI
101: YEAFLPKDHP KPKPDSPMEY RTKFIRAKYE TQDFLKPSLR ISSKAGLEST KSLNSVDNSF SSTSRKHAPE DTREFVGQLN ITVVKGSGLA VRDMLTSDPY
201: VVLSLGEQKA QTTVKASDLN PVWNEVLNLS VPRNYGPLKL EVYDHDTFSA DDIMGEAEID LKPMITAAMA FGDPSRHADM QIGRWFMTRD NCLLSDSIVN
301: ISSGKVKQEV YLKLQNVESG EMELELEWAR LD

Best Arabidopsis Sequence Match ( AT4G21160.4 )
(BLAST)

001: MSYSGAGLGK PGSGKRRIRD LLTQSDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GSHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFI
101: PEGSSKPGPD ASHDQRMRFI RSKYEHQEFL KPSLRITSVR GSSTKTPAFL SSSLSKKIVD SFRTNSSSQQ PQLEGMVEFI GLLKVTIKKG TNMAIRDMMS
201: SDPYVVLTLG QQKAQSTVVK SNLNPVWNEE LMLSVPHNYG SVKLQVFDYD TFSADDIMGE AEIDIQPLIT SAMAFGDPEM FGDMQIGKWL KSHDNALIED
301: SIINIADGKV KQEVQIKLQN VESGELELEM EWLPLEQ

Arabidopsis Description

AGD12ZAC [Source:UniProtKB/TrEMBL;Acc:A0A178UUS8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.