Factsheet for TraesCS1A01G239200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G251400.1	Wheat	cytosol	63.47	96.36
TraesCS1D01G239400.3	Wheat	cytosol	97.07	96.3
HORVU1Hr1G057260.3	Barley	cytosol	90.4	82.89
Zm00001d038063_P001	Maize	nucleus	74.67	72.73
EES18146	Sorghum	cytosol	74.4	72.47
Os05t0382000-01	Rice	cytosol	76.0	72.15
CDY69110	Canola	cytosol	15.2	60.64
GSMUA_Achr8P09660_001	Banana	cytosol, plastid	53.33	57.64
GSMUA_Achr5P16180_001	Banana	cytosol	56.27	57.49
KRH13401	Soybean	cytosol	51.47	52.45
Bra040041.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	46.67	52.24
KRH20756	Soybean	cytosol	51.2	52.17
CDY22145	Canola	cytosol	52.8	51.7
AT3G07940.1	Thale cress	cytosol	53.07	51.69
KRH30029	Soybean	cytosol	53.87	51.66
Solyc08g043140.2.1	Tomato	cytosol	53.87	51.14
VIT_13s0019g00350.t01	Wine grape	cytosol	53.6	50.76
PGSC0003DMT400068533	Potato	cytosol	53.33	50.63
Bra001277.1-P	Field mustard	cytosol	51.2	50.0
CDX74022	Canola	cytosol	51.2	50.0
CDY28007	Canola	cytosol	52.8	48.77
Bra029688.1-P	Field mustard	cytosol	52.0	48.03
CDY35974	Canola	cytosol	52.0	48.03
KRH62915	Soybean	cytosol	42.67	45.58
TraesCS6A01G160700.1	Wheat	cytosol	38.67	44.89
TraesCS6A01G394700.1	Wheat	cytosol, endoplasmic reticulum	18.67	41.92
TraesCS2A01G261500.1	Wheat	cytosol	17.87	41.61
TraesCS2A01G501300.1	Wheat	mitochondrion	18.4	40.59
TraesCS6A01G285400.2	Wheat	golgi	35.2	39.76
TraesCS2A01G229200.1	Wheat	endoplasmic reticulum, extracellular	17.07	38.55
TraesCS2A01G229100.1	Wheat	cytosol	16.0	35.71
TraesCS5A01G546300.1	Wheat	cytosol	16.0	35.71
TraesCS5A01G169300.1	Wheat	cytosol	16.27	35.67
TraesCS2A01G261400.1	Wheat	cytosol	16.0	35.29

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150	GO:GO:0030234
InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	PFAM:PF00168	PFAM:PF01412
PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF390	SMART:SM00105
SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863	EnsemblPlantsGene:TraesCS1A01G239200	EnsemblPlants:TraesCS1A01G239200.1	TIGR:cd04038
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:426528898..426531822

Molecular Weight (calculated)

42093.7 Da

IEP (calculated)

5.605

GRAVY (calculated)

-0.529

Length

375 amino acids

Sequence
(BLAST)

001: MDEENSLLHF LDDTPSSHYR RTCGGYSSQN DGDDHSDTSD ADPSNARDRL ETLLNQPANK FCADCGTPDP KWAALPFGAF ICIKCSGTHR SLGVHISKVI
101: SVNLDEWTDE EVNCLANSGG NATVNTKYEA FLPENYKKPR QDFATEDRAV FIRKKYELQQ FVTNPQFACP LHKHGAEKRH NQQHSGSKHG TFRNSWRKKE
201: SENKGGKKMM DVGMVEFVGL IKVDIIRGTD LAVRDVMSSD PYVMIMLGHQ SMKTKVIKNT LNPIWNERLM LSIPEPVPPL KVQVFDKDTF TSDDRMGEAE
301: VDIQPLISAA REYQSSIITE STQICTFLAS ENSILAKDSI ISIVDGKVEQ EIALRLQNVE HGELEIKLEC VPLSQ

Best Arabidopsis Sequence Match ( AT3G07940.1 )
(BLAST)

001: MSLGQENVDP VEVSGSHACL YELLCSETPK WTPLRVEDLQ TSSSDPRDRL EKLLKQPGNK YCADCGSPEP KWVSLSLGVF ICIKCSGVHR SLGVHISKVL
101: SVKLDEWTDD QVDMLVGYGG NTAVNERFEA CNIDQSKKPK PDSTNEERND FIRKKYEQHQ FMDPKDGALC TYQQPSRTNT SPPSLCSASH RSTKNRIGHA
201: FRNSWGRRES DHKGPKKSNS MAGMVEFVGL IKVNVVKGTN LAVRDVMTSD PYVILALGQQ SVKTRVIKNN LNPVWNETLM LSIPEPMPPL KVLVYDKDTF
301: STDDFMGEAE IDIQPLVSAA KAYETSSIKE PMQLGSWVAS KENTLVSDGI ILLEDGKVKQ DISLRLQNVE RGVLEIQLEC LPLTQ

Arabidopsis Description

AGD11Probable ADP-ribosylation factor GTPase-activating protein AGD11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.