Factsheet for TraesCS1D01G239400.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G251400.1	Wheat	cytosol	64.02	97.98
TraesCS1A01G239200.1	Wheat	cytosol	96.3	97.07
HORVU1Hr1G057260.3	Barley	cytosol	88.89	82.15
Zm00001d038063_P001	Maize	nucleus	73.55	72.21
EES18146	Sorghum	cytosol	73.55	72.21
Os05t0382000-01	Rice	cytosol	74.34	71.14
CDY69110	Canola	cytosol	14.81	59.57
GSMUA_Achr8P09660_001	Banana	cytosol, plastid	52.91	57.64
GSMUA_Achr5P16180_001	Banana	cytosol	55.82	57.49
KRH13401	Soybean	cytosol	51.06	52.45
Bra040041.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	46.3	52.24
KRH30029	Soybean	cytosol	53.97	52.17
KRH20756	Soybean	cytosol	50.79	52.17
CDY22145	Canola	cytosol	52.38	51.7
AT3G07940.1	Thale cress	cytosol	52.65	51.69
Solyc08g043140.2.1	Tomato	cytosol	53.44	51.14
PGSC0003DMT400068533	Potato	cytosol	52.91	50.63
VIT_13s0019g00350.t01	Wine grape	cytosol	52.91	50.51
Bra001277.1-P	Field mustard	cytosol	50.79	50.0
CDX74022	Canola	cytosol	50.79	50.0
CDY28007	Canola	cytosol	52.38	48.77
CDY35974	Canola	cytosol	51.59	48.03
Bra029688.1-P	Field mustard	cytosol	51.59	48.03
KRH62915	Soybean	cytosol	42.86	46.15
TraesCS3D01G494100.1	Wheat	cytosol	57.67	44.58
TraesCS6D01G152000.1	Wheat	cytosol	38.1	42.23
TraesCS6D01G380000.1	Wheat	cytosol, extracellular	18.52	41.92
TraesCS2D01G501800.2	Wheat	mitochondrion	18.52	41.18
TraesCS2D01G262500.1	Wheat	cytosol	16.4	36.47
TraesCS5D01G173700.1	Wheat	cytosol	15.87	35.09
TraesCS2D01G233300.1	Wheat	cytosol	15.34	34.52
TraesCS2D01G233200.1	Wheat	endoplasmic reticulum, extracellular	16.93	32.49
TraesCS6D01G265900.2	Wheat	cytosol	34.92	30.14

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005096	GO:GO:0008150	GO:GO:0030234
InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	PFAM:PF00168	PFAM:PF01412
PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF390	SMART:SM00105
SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863	EnsemblPlantsGene:TraesCS1D01G239400	EnsemblPlants:TraesCS1D01G239400.3	TIGR:cd04038
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:329476987..329480186

Molecular Weight (calculated)

42466.2 Da

IEP (calculated)

5.304

GRAVY (calculated)

-0.506

Length

378 amino acids

Sequence
(BLAST)

001: MDDENNLLHF LDDTPSSHYR KTCDGYSSQN DGDDQSDTSD ADPSNARDRL ETLLNQPANK FCADCGTPDP KWAALPFGAF ICIKCSGTHR SLGVHISKCA
101: QVISVNLDEW TDEEVNCLAN SGGNATVNTK YEAFLPENYK KPRQDFATED RAIFIRKKYE LQQFVTNPQF ACPLHKHGAE KRHNQQHSGS KHGTFRNSWR
201: KKESENKGVK KMMDVGMVEF VGLIKVDIIR GTDLAVRDVM SSDPYVMIIL GHQSMKTKVI KNTLNPIWNE RLMLSIPDPV PPLKVLVFDK DTFTSDDRMG
301: EAEVDIQPLI SAAREYQSSI ITESTQICTF LASENSILAK DSIISIVDGK VEQEIALRLQ NVEHGELEIK LECVPLNQ

Best Arabidopsis Sequence Match ( AT3G07940.1 )
(BLAST)

001: MSLGQENVDP VEVSGSHACL YELLCSETPK WTPLRVEDLQ TSSSDPRDRL EKLLKQPGNK YCADCGSPEP KWVSLSLGVF ICIKCSGVHR SLGVHISKVL
101: SVKLDEWTDD QVDMLVGYGG NTAVNERFEA CNIDQSKKPK PDSTNEERND FIRKKYEQHQ FMDPKDGALC TYQQPSRTNT SPPSLCSASH RSTKNRIGHA
201: FRNSWGRRES DHKGPKKSNS MAGMVEFVGL IKVNVVKGTN LAVRDVMTSD PYVILALGQQ SVKTRVIKNN LNPVWNETLM LSIPEPMPPL KVLVYDKDTF
301: STDDFMGEAE IDIQPLVSAA KAYETSSIKE PMQLGSWVAS KENTLVSDGI ILLEDGKVKQ DISLRLQNVE RGVLEIQLEC LPLTQ

Arabidopsis Description

AGD11Probable ADP-ribosylation factor GTPase-activating protein AGD11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.