Factsheet for PGSC0003DMT400068533

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g043140.2.1	Tomato	cytosol	98.23	98.23
VIT_13s0019g00350.t01	Wine grape	cytosol	70.89	70.71
GSMUA_Achr8P09660_001	Banana	cytosol, plastid	59.75	68.01
GSMUA_Achr5P16180_001	Banana	cytosol	63.04	67.85
KRH30029	Soybean	cytosol	66.84	67.52
KRH20756	Soybean	cytosol	61.27	65.76
AT3G07940.1	Thale cress	cytosol	63.8	65.45
Bra040041.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	55.19	65.07
KRH13401	Soybean	cytosol	60.51	64.95
CDX74022	Canola	cytosol	61.27	63.02
Bra001277.1-P	Field mustard	cytosol	61.27	63.02
CDY22145	Canola	cytosol	61.01	62.92
CDY35974	Canola	cytosol	62.03	60.34
Bra029688.1-P	Field mustard	cytosol	61.77	60.1
KRH62915	Soybean	cytosol	53.16	59.83
CDY28007	Canola	cytosol	61.27	59.61
TraesCS1B01G251400.1	Wheat	cytosol	35.95	57.49
Os01t0951100-01	Rice	cytosol	54.68	56.69
TraesCS1A01G239200.1	Wheat	cytosol	50.63	53.33
TraesCS1D01G239400.3	Wheat	cytosol	50.63	52.91
Zm00001d038063_P001	Maize	nucleus	50.63	51.95
EES18146	Sorghum	cytosol	49.11	50.39
Os05t0382000-01	Rice	cytosol	49.87	49.87
HORVU1Hr1G057260.3	Barley	cytosol	49.37	47.68
TraesCS3B01G548000.1	Wheat	cytosol	52.91	43.91
HORVU3Hr1G108480.1	Barley	cytosol	52.41	43.12
PGSC0003DMT400078786	Potato	cytosol	17.97	43.03
PGSC0003DMT400038836	Potato	cytosol	18.23	42.6
TraesCS3D01G494100.1	Wheat	cytosol	51.9	41.92
PGSC0003DMT400074100	Potato	cytosol	16.71	40.0
PGSC0003DMT400020051	Potato	cytosol	16.2	39.02
PGSC0003DMT400037472	Potato	cytosol	17.72	38.67
PGSC0003DMT400042134	Potato	cytosol	13.16	38.52
PGSC0003DMT400034618	Potato	cytosol	16.2	38.1
PGSC0003DMT400059720	Potato	cytosol	15.7	37.13
Zm00001d011855_P002	Maize	cytosol	51.9	19.51

Protein Annotations

EntrezGene:102582770	Gene3D:2.60.40.150	Gene3D:3.30.40.160	MapMan:35.1	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488
GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR000008	InterPro:IPR001164
InterPro:IPR035892	InterPro:IPR038508	UniProt:M1CJ75	PFAM:PF00168	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400026658
PGSC:PGSC0003DMG400026658	EnsemblPlants:PGSC0003DMT400068533	PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180
PANTHER:PTHR23180:SF390	SMART:SM00105	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863	UniParc:UPI000295104C
RefSeq:XP_006355263.1	SEG:seg	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026658]

Coordinates

chr8:-:19384358..19389235

Molecular Weight (calculated)

44285.0 Da

IEP (calculated)

7.762

GRAVY (calculated)

-0.435

Length

395 amino acids

Sequence
(BLAST)

001: MSIHHQGNVD SNNVTGSCLY ELLQMESSAN CSGHQPERRN RSSSPRHRLQ RLLSESGNRF CADCGSPDPK WVSINLGVFI CIKCSGVHRS LGVHISKVLS
101: VKLDEWTDDQ VDSMIEMGGN SAANMKYEAV IPDSYRKPRP EALIEVRTDF IRRKYELQQF LNSDEQMICP FPPSSSSHYN SLSLTCSLAL DKRNYEKQST
201: GHRIHGIGHA FRNSWRRKES EHRSTKKSNS MAGMVEFIGL IKVNVVRGTN LAVRDVVTSD PYVILSLGSQ SVKTRVIKNN LNPVWNEKLM LSIPENVPPL
301: KMLVYDKDTF TTDDFMGEAE IDIEPLVTAA KASENSTLSE SMPLGKWKAS KDNTLVKDGM ISLIDGKVKQ EISVKLQNVE RGVLEIELEC VPLTQ

Best Arabidopsis Sequence Match ( AT3G07940.1 )
(BLAST)

001: MSLGQENVDP VEVSGSHACL YELLCSETPK WTPLRVEDLQ TSSSDPRDRL EKLLKQPGNK YCADCGSPEP KWVSLSLGVF ICIKCSGVHR SLGVHISKVL
101: SVKLDEWTDD QVDMLVGYGG NTAVNERFEA CNIDQSKKPK PDSTNEERND FIRKKYEQHQ FMDPKDGALC TYQQPSRTNT SPPSLCSASH RSTKNRIGHA
201: FRNSWGRRES DHKGPKKSNS MAGMVEFVGL IKVNVVKGTN LAVRDVMTSD PYVILALGQQ SVKTRVIKNN LNPVWNETLM LSIPEPMPPL KVLVYDKDTF
301: STDDFMGEAE IDIQPLVSAA KAYETSSIKE PMQLGSWVAS KENTLVSDGI ILLEDGKVKQ DISLRLQNVE RGVLEIQLEC LPLTQ

Arabidopsis Description

AGD11Probable ADP-ribosylation factor GTPase-activating protein AGD11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.