Factsheet for PGSC0003DMT400078786

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091520.2.1	Tomato	cytosol, mitochondrion	96.36	96.36
KRH30951	Soybean	cytosol	68.48	68.48
KRG97928	Soybean	cytosol	67.88	67.88
PGSC0003DMT400074100	Potato	cytosol	66.06	66.06
VIT_14s0006g01250.t01	Wine grape	cytosol	66.06	66.06
Bra018410.1-P	Field mustard	mitochondrion	64.85	63.69
CDY38572	Canola	mitochondrion	64.85	63.69
GSMUA_Achr6P07630_001	Banana	cytosol	63.64	63.25
CDY01709	Canola	mitochondrion	64.24	63.1
CDY27005	Canola	cytosol	64.24	63.1
Bra028147.1-P	Field mustard	cytosol	63.64	62.5
Bra028148.1-P	Field mustard	mitochondrion	63.03	61.9
CDX74561	Canola	mitochondrion	63.03	61.9
CDX74562	Canola	cytosol	62.42	61.68
Bra025441.1-P	Field mustard	cytosol	62.42	61.31
GSMUA_Achr10P...	Banana	cytosol	60.0	61.11
CDX96152	Canola	cytosol	64.24	60.57
Bra004161.1-P	Field mustard	cytosol	64.24	60.57
AT1G66360.1	Thale cress	cytosol	63.64	60.34
CDY07499	Canola	cytosol	63.64	60.0
TraesCS2B01G529400.1	Wheat	mitochondrion	61.21	59.41
Os02t0327000-01	Rice	cytosol	59.39	59.39
CDX99693	Canola	cytosol	60.0	58.93
GSMUA_Achr2P15950_001	Banana	cytosol	61.21	58.38
TraesCS2A01G501300.1	Wheat	mitochondrion	60.0	58.24
TraesCS2D01G501800.2	Wheat	mitochondrion	60.0	58.24
PGSC0003DMT400037472	Potato	cytosol	63.64	58.01
HORVU0Hr1G039050.2	Barley	mitochondrion	59.39	57.99
AT5G37740.2	Thale cress	cytosol	62.42	57.87
EES01097	Sorghum	cytosol	58.18	57.83
CDY27654	Canola	cytosol	61.82	56.98
Zm00001d011396_P001	Maize	cytosol	57.58	53.98
PGSC0003DMT400042134	Potato	cytosol	41.21	50.37
Zm00001d044179_P001	Maize	cytosol	58.79	48.26
PGSC0003DMT400020051	Potato	cytosol	46.67	46.95
PGSC0003DMT400059720	Potato	cytosol	46.06	45.51
PGSC0003DMT400038836	Potato	cytosol	44.24	43.2
PGSC0003DMT400034618	Potato	cytosol	41.21	40.48
CDY49631	Canola	extracellular	28.48	39.17
CDY01706	Canola	golgi, mitochondrion, plasma membrane, plastid	53.33	37.29
PGSC0003DMT400068533	Potato	cytosol	43.03	17.97

Protein Annotations

EnsemblPlants:PGSC0003DMT400078786	EnsemblPlantsGene:PGSC0003DMG400030656	EntrezGene:102592837	InterPro:C2_dom	InterPro:IPR000008	PANTHER:PTHR23180
PANTHER:PTHR23180:SF310	PFAM:PF00168	PFscan:PS50004	PGSC:PGSC0003DMG400030656	RefSeq:XP_006357769.1	SMART:SM00239
SUPFAM:SSF49562	UniParc:UPI000296F1C1	UniProt:M1D0Q6	MapMan:11.1.2.1.2	:	:

Description

ARF GTPase activator [Source:PGSC_GENE;Acc:PGSC0003DMG400030656]

Coordinates

chr2:-:41918983..41921425

Molecular Weight (calculated)

19082.3 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.342

Length

165 amino acids

Sequence
(BLAST)

001: MENLLGLMRV RIHRGINLAI RDVTTSDPYV VVRMGKQKLK TRVVKKNLNP EWNEELTLSI TEPILPINLH VYDKDIFSLD DKMGDAEIDI HPFIDAVRKR
101: YKNIPSGTII TKIKPSRQNC LSEESPIVWE NDQVVQNVFI RLRNVERGEI ELQLQWIDIP GSKGV

Best Arabidopsis Sequence Match ( AT1G73580.1 )
(BLAST)

001: MSLMDNLLGI LRVRVQRGVN LAVRDVSSSD PYVVLKLGRQ KLKTKVVKQN VNPQWQEDLS FTVTDPNLPL TLIVYDHDFF SKDDKMGDAE IDLKPYIEAL
101: RMELSGLPDG TIISTIGPSR GNCLAEESYI RWINDRIVQH ICLRLRNVER GEVEIELQWI DLPGSKGL

Arabidopsis Description

CAR3Protein C2-DOMAIN ABA-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6B7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.