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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400043358

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G01540.1 PGSC0003DMT400043358 AT3G54220.1 19228333
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g053390.2.1 Tomato cytosol, mitochondrion 97.78 79.04
VIT_01s0011g05230.t01 Wine grape cytosol 62.22 50.6
PGSC0003DMT400059720 Potato cytosol 62.22 50.3
PGSC0003DMT400020051 Potato cytosol 59.26 48.78
AT1G70810.1 Thale cress cytosol 59.26 48.48
Bra016185.1-P Field mustard cytosol 58.52 47.88
Bra017445.1-P Field mustard cytosol 62.96 47.22
AT2G01540.1 Thale cress cytosol 60.74 45.56
Bra026650.1-P Field mustard cytosol 60.0 45.0
Bra024877.1-P Field mustard cytosol 59.26 44.44
GSMUA_Achr10P... Banana cytosol 52.59 43.83
PGSC0003DMT400074100 Potato cytosol 53.33 43.64
Bra024565.1-P Field mustard cytosol 51.11 43.12
KRG94240 Soybean cytosol 53.33 42.6
AT1G70800.1 Thale cress cytosol 54.81 42.53
KRH50393 Soybean cytosol 53.33 42.35
GSMUA_Achr2P15950_001 Banana cytosol 53.33 41.62
PGSC0003DMT400078786 Potato cytosol 50.37 41.21
KRH38191 Soybean cytosol 54.81 41.11
Os02t0327000-01 Rice cytosol 49.63 40.61
AT1G23140.1 Thale cress cytosol, mitochondrion 48.89 40.0
GSMUA_Achr6P07630_001 Banana cytosol 48.89 39.76
Bra016186.1-P Field mustard cytosol 54.07 39.46
PGSC0003DMT400037472 Potato cytosol 52.59 39.23
KRG94243 Soybean cytosol, mitochondrion 49.63 38.51
AT1G70790.1 Thale cress cytosol 52.59 38.38
EES01097 Sorghum cytosol 46.67 37.95
TraesCS2A01G501300.1 Wheat mitochondrion 46.67 37.06
TraesCS2D01G501800.2 Wheat mitochondrion 46.67 37.06
HORVU0Hr1G039050.2 Barley mitochondrion 45.93 36.69
TraesCS2B01G529400.1 Wheat mitochondrion 45.93 36.47
Zm00001d011396_P001 Maize cytosol 46.67 35.8
Zm00001d044179_P001 Maize cytosol 45.93 30.85
PGSC0003DMT400034618 Potato cytosol 37.78 30.36
PGSC0003DMT400038836 Potato cytosol 37.78 30.18
Bra003940.1-P Field mustard cytosol 30.37 29.29
Bra003941.1-P Field mustard cytosol 52.59 28.06
KRG89347 Soybean cytosol 11.85 23.88
PGSC0003DMT400068533 Potato cytosol 38.52 13.16
CDY23476 Canola cytosol 0.74 0.85
Protein Annotations
EnsemblPlants:PGSC0003DMT400042134EnsemblPlantsGene:PGSC0003DMG400016338Gene3D:2.60.40.150InterPro:C2_domInterPro:C2_domain_sfInterPro:IPR000008
InterPro:IPR035892PANTHER:PTHR23180PANTHER:PTHR23180:SF296PFAM:PF00168PFscan:PS50004PGSC:PGSC0003DMG400016338
SUPFAM:SSF49562UniParc:UPI000295472CUniProt:M1BCJ9MapMan:11.1.2.1.2::
Description
ARF GTPase activator [Source:PGSC_GENE;Acc:PGSC0003DMG400016338]
Coordinates
chr6:+:39129029..39130376
Molecular Weight (calculated)
15269.4 Da
IEP (calculated)
4.649
GRAVY (calculated)
-0.447
Length
135 amino acids
Sequence
(BLAST)
001: MGGQKSKTRV IKENCNPVWN EELSLALYDP NLPITLTVYD KDTFTADDKM GNANIDIKPY LDAINMGLEG LPDGVKVDRV QPNRENCLSD ESCILWENGK
101: MTQKMLLRLQ NVECGEIEIQ IELISAHGKR GRLYI
Best Arabidopsis Sequence Match ( AT2G01540.1 )
(BLAST)
001: MDQKPLGLLT IHVKRGINLA IRDHRSSDPY IVLNVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANID IQPYLEALKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD LILRLNNVEC GEIEIMLEWH EGAGCRGITS SSKGGGSSST
Arabidopsis Description
CAR10Protein C2-DOMAIN ABA-RELATED 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.