Factsheet for Solyc06g053390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g074680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01540.1	Solyc10g074680.1.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042134	Potato	cytosol	79.04	97.78
VIT_01s0011g05230.t01	Wine grape	cytosol	62.87	63.25
AT1G70810.1	Thale cress	cytosol	61.08	61.82
Bra016185.1-P	Field mustard	cytosol	59.88	60.61
Solyc04g007800.2.1	Tomato	cytosol	60.48	60.48
Bra017445.1-P	Field mustard	cytosol	64.67	60.0
Bra026650.1-P	Field mustard	cytosol	61.68	57.22
Bra024877.1-P	Field mustard	cytosol	61.68	57.22
AT2G01540.1	Thale cress	cytosol	61.08	56.67
Solyc02g063370.2.1	Tomato	cytosol	56.29	56.63
Solyc03g118720.2.1	Tomato	cytosol, mitochondrion	55.69	56.36
Solyc03g118710.2.1	Tomato	cytosol	55.09	55.76
Solyc02g063360.2.1	Tomato	cytosol	55.09	55.42
Bra024565.1-P	Field mustard	cytosol	52.69	55.0
KRG94240	Soybean	cytosol	55.09	54.44
GSMUA_Achr10P...	Banana	cytosol	52.69	54.32
Solyc06g068940.2.1	Tomato	cytosol	53.29	53.94
AT1G70800.1	Thale cress	cytosol	55.09	52.87
Solyc12g040800.1.1	Tomato	cytosol	52.1	52.41
Solyc02g091520.2.1	Tomato	cytosol, mitochondrion	51.5	52.12
AT1G23140.1	Thale cress	cytosol, mitochondrion	51.5	52.12
KRH50393	Soybean	cytosol	52.69	51.76
KRH38191	Soybean	cytosol	55.69	51.67
Bra016186.1-P	Field mustard	cytosol	56.89	51.35
GSMUA_Achr6P07630_001	Banana	cytosol	50.3	50.6
GSMUA_Achr2P15950_001	Banana	cytosol	52.1	50.29
AT1G70790.1	Thale cress	cytosol	55.69	50.27
Os02t0327000-01	Rice	cytosol	49.1	49.7
KRG94243	Soybean	cytosol, mitochondrion	51.5	49.43
EES01097	Sorghum	cytosol	47.31	47.59
TraesCS2A01G501300.1	Wheat	mitochondrion	47.31	46.47
TraesCS2D01G501800.2	Wheat	mitochondrion	47.31	46.47
KRG89347	Soybean	cytosol	18.56	46.27
HORVU0Hr1G039050.2	Barley	mitochondrion	46.71	46.15
TraesCS2B01G529400.1	Wheat	mitochondrion	46.71	45.88
Zm00001d011396_P001	Maize	cytosol	46.71	44.32
Solyc04g015070.2.1	Tomato	cytosol	40.12	39.65
Zm00001d044179_P001	Maize	cytosol	46.71	38.81
Bra003941.1-P	Field mustard	cytosol	55.69	36.76
Bra003940.1-P	Field mustard	cytosol	23.35	27.86
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	39.52	19.94
Solyc08g043140.2.1	Tomato	cytosol	39.52	16.71
CDY23476	Canola	cytosol	0.6	0.85

Protein Annotations

EnsemblPlants:Solyc06g053390.2.1	EnsemblPlantsGene:Solyc06g053390.2	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR23180	PANTHER:PTHR23180:SF296	PFAM:PF00168	PFscan:PS50004	SMART:SM00239
SUPFAM:SSF49562	UniParc:UPI00027674A2	UniProt:K4C626	MapMan:11.1.2.1.2	:	:

Description

No Description!

Coordinates

chr6:+:36158140..36159697

Molecular Weight (calculated)

18880.9 Da

IEP (calculated)

5.035

GRAVY (calculated)

-0.252

Length

167 amino acids

Sequence
(BLAST)

001: MNVLGVLKIR VRRGINLAIR DSFCSDPYVV ITMGGQKSKT RVIKENCNPV WNEELSLALY DPNLPITLTV YDKDTFTADD KMGDANIDIK PYLDAINMGL
101: EGLPDGVKVD RVQPNRENCL SDESCILWEN GKMTQNMLLR LQHVECGEIE IQIELISAHG KRGRLYI

Best Arabidopsis Sequence Match ( AT1G70810.1 )
(BLAST)

001: MEELVGLLRI RVKRGINLAQ RDTLSSDPFV VITMGSQKLK TRVVENNCNP EWNEELTLAL RHPDEPVNLI VYDKDTFTSH DKMGDAKIDI KPFLEVHKMG
101: LQELPDGTEI KRVVPNRENC LAEASSIVSN NGKIVQNMIL LLRNVECGEV EIQLEWIDIP GSRGL

Arabidopsis Description

CAR7Protein C2-DOMAIN ABA-RELATED 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.