Factsheet for Solyc12g040800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037472	Potato	cytosol	97.59	89.5
Solyc06g068940.2.1	Tomato	cytosol	79.52	80.0
Solyc03g118720.2.1	Tomato	cytosol, mitochondrion	76.51	76.97
Solyc03g118710.2.1	Tomato	cytosol	75.3	75.76
KRH41845	Soybean	cytosol	72.89	73.33
KRH60540	Soybean	cytosol	75.3	72.25
CDY51927	Canola	cytosol	75.9	71.19
AT3G17980.1	Thale cress	cytosol	75.3	70.62
CDY16452	Canola	mitochondrion	72.29	70.59
Bra014145.1-P	Field mustard	mitochondrion	72.29	70.59
CDX75953	Canola	cytosol	74.7	70.06
Bra001693.1-P	Field mustard	cytosol	74.1	69.49
CDX77307	Canola	mitochondrion	71.08	69.41
KRH48640	Soybean	cytosol	73.49	69.32
VIT_17s0000g02290.t01	Wine grape	cytosol, plastid	75.3	69.06
KRH39062	Soybean	cytosol	43.98	66.97
GSMUA_Achr6P07630_001	Banana	cytosol	65.66	65.66
GSMUA_Achr10P...	Banana	cytosol	63.86	65.43
AT1G48590.2	Thale cress	cytosol, plasma membrane	77.71	64.5
CDY47746	Canola	mitochondrion	64.46	63.69
GSMUA_Achr2P15950_001	Banana	cytosol	66.27	63.58
CDX82060	Canola	mitochondrion	63.86	63.1
Bra008104.1-P	Field mustard	cytosol, mitochondrion	63.86	63.1
Solyc02g063360.2.1	Tomato	cytosol	62.05	62.05
Solyc02g091520.2.1	Tomato	cytosol, mitochondrion	61.45	61.82
HORVU0Hr1G039050.2	Barley	mitochondrion	62.05	60.95
Solyc02g063370.2.1	Tomato	cytosol	60.84	60.84
AT1G73580.1	Thale cress	mitochondrion	61.45	60.71
Os02t0327000-01	Rice	cytosol	60.24	60.61
TraesCS2A01G501300.1	Wheat	mitochondrion	62.05	60.59
KRH39078	Soybean	endoplasmic reticulum, extracellular	74.1	60.29
EES01097	Sorghum	cytosol	59.04	59.04
TraesCS2B01G529400.1	Wheat	mitochondrion	59.64	58.24
TraesCS2D01G501800.2	Wheat	mitochondrion	59.64	58.24
Zm00001d011396_P001	Maize	cytosol	58.43	55.11
Solyc06g053390.2.1	Tomato	cytosol, mitochondrion	52.41	52.1
Zm00001d044179_P001	Maize	cytosol	59.64	49.25
Solyc04g007800.2.1	Tomato	cytosol	45.78	45.51
Solyc04g015070.2.1	Tomato	cytosol	39.76	39.05
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	43.98	22.05
Solyc08g043140.2.1	Tomato	cytosol	41.57	17.47

Protein Annotations

EnsemblPlants:Solyc12g040800.1.1	EnsemblPlantsGene:Solyc12g040800.1	InterPro:C2_dom	InterPro:IPR000008	PANTHER:PTHR23180	PANTHER:PTHR23180:SF310
PFAM:PF00168	PFscan:PS50004	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI000276A800	UniProt:K4DEX4
MapMan:11.1.2.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:42554019..42555729

Molecular Weight (calculated)

18830.1 Da

IEP (calculated)

7.294

GRAVY (calculated)

-0.248

Length

166 amino acids

Sequence
(BLAST)

001: MDNLMGLLRI KIKKGVNLAV RDVRTSDPYC VVKMGKKQKL KTRVIKKDIN PEWNEDLTLS VSDPSLPVKL TVYDHDTFTM DDKMGDAEFD IKSFVEALKM
101: NLHGLPSGTV ITRVLPCRTN CLAEESRVIW DDGKVVQDMI LRLRNVECGE VELQLQWIDL PGTKVG

Best Arabidopsis Sequence Match ( AT1G48590.2 )
(BLAST)

001: MIVSFLYFSS LFPTSLRKIN LVAGEKHKDR RMKPSLMDSL LGLLRIRIKR GVNLAVRDLN SSDPYVVVKM AKQKLKTRVI YKNVNPEWNE DLTLSVSDPN
101: LTVLLTVYDY DTFTKDDKMG DAEFGIKPFV NALKMHLHDL PSGTIVTTVQ PSRDNCLAEE SRVIWSDGKL VQDIVLRLRH VECGEVEAQL QWIDLPGKGL

Arabidopsis Description

CAR5Protein C2-DOMAIN ABA-RELATED 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP65]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.