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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • cytosol 4
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc10g074680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G01540.1 Solyc10g074680.1.1 AT3G54220.1 19228333
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400059720 Potato cytosol 94.61 94.61
PGSC0003DMT400020051 Potato cytosol 92.22 93.9
Solyc06g053390.2.1 Tomato cytosol, mitochondrion 60.48 60.48
AT1G23140.1 Thale cress cytosol, mitochondrion 51.5 52.12
Bra016185.1-P Field mustard cytosol 51.5 52.12
AT1G70810.1 Thale cress cytosol 51.5 52.12
Bra024565.1-P Field mustard cytosol 49.7 51.88
VIT_01s0011g05230.t01 Wine grape cytosol 51.5 51.81
GSMUA_Achr10P... Banana cytosol 47.31 48.77
KRG94240 Soybean cytosol 48.5 47.93
Solyc03g118710.2.1 Tomato cytosol 47.31 47.88
Solyc02g063370.2.1 Tomato cytosol 46.71 46.99
Solyc03g118720.2.1 Tomato cytosol, mitochondrion 46.11 46.67
GSMUA_Achr2P15950_001 Banana cytosol 47.9 46.24
Bra017445.1-P Field mustard cytosol 49.7 46.11
KRH38191 Soybean cytosol 49.7 46.11
Solyc02g063360.2.1 Tomato cytosol 45.51 45.78
Solyc12g040800.1.1 Tomato cytosol 45.51 45.78
Bra024877.1-P Field mustard cytosol 49.1 45.56
AT2G01540.1 Thale cress cytosol 49.1 45.56
KRH50393 Soybean cytosol 46.11 45.29
HORVU0Hr1G039050.2 Barley mitochondrion 45.51 44.97
Solyc06g068940.2.1 Tomato cytosol 44.31 44.85
Os02t0327000-01 Rice cytosol 44.31 44.85
KRG94243 Soybean cytosol, mitochondrion 46.71 44.83
AT1G70800.1 Thale cress cytosol 46.71 44.83
EES01097 Sorghum cytosol 44.31 44.58
Bra026650.1-P Field mustard cytosol 47.9 44.44
Solyc02g091520.2.1 Tomato cytosol, mitochondrion 43.71 44.24
TraesCS2D01G501800.2 Wheat mitochondrion 44.91 44.12
TraesCS2A01G501300.1 Wheat mitochondrion 44.91 44.12
GSMUA_Achr6P07630_001 Banana cytosol 43.71 43.98
TraesCS2B01G529400.1 Wheat mitochondrion 44.31 43.53
AT1G70790.1 Thale cress cytosol 47.9 43.24
Bra016186.1-P Field mustard cytosol 47.31 42.7
KRG89347 Soybean cytosol 16.77 41.79
Zm00001d011396_P001 Maize cytosol 42.52 40.34
Zm00001d044179_P001 Maize cytosol 45.51 37.81
Solyc04g015070.2.1 Tomato cytosol 36.53 36.09
Bra003941.1-P Field mustard cytosol 47.31 31.23
Bra003940.1-P Field mustard cytosol 20.36 24.29
Solyc02g024020.2.1 Tomato cytosol, mitochondrion 37.72 19.03
Solyc08g043140.2.1 Tomato cytosol 37.72 15.95
CDY23476 Canola cytosol 1.2 1.69
Protein Annotations
EnsemblPlants:Solyc04g007800.2.1EnsemblPlantsGene:Solyc04g007800.2Gene3D:2.60.40.150InterPro:C2_domInterPro:C2_domain_sfInterPro:IPR000008
InterPro:IPR035892PANTHER:PTHR23180PANTHER:PTHR23180:SF296PFAM:PF00168PFscan:PS50004SMART:SM00239
SUPFAM:SSF49562UniParc:UPI0002766BB0UniProt:K4BNT7MapMan:11.1.2.1.2::
Description
No Description!
Coordinates
chr4:-:1490670..1493693
Molecular Weight (calculated)
18932.1 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.270
Length
167 amino acids
Sequence
(BLAST)
001: MLGLVKIRVH KGINLPLKDI FHSDPYVVLT MGDQKVKTSC KKNNCNPVWD DELTLALKYP NVQIGLTVYD KDTFSKDDKI GEAKIDIKPY LKALEMSYHQ
101: DLPNGVKVDK VHPNSDNCLA KESCIIWENG KLIQDMTLKL QNVECGEVKL QIEVIPKILS EDAFYIA
Best Arabidopsis Sequence Match ( AT1G23140.1 )
(BLAST)
001: MENLVGLLRI RVKRGINLVS RDSNTSDPFV VVTMGSQKLK TRGVENSCNP EWDDELTLGI NDPNQHVTLE VYDKDTFTSH DPMGDAEIDI KPFFEVQGTD
101: IQELTNGTEI RRVKPSGDNC LAEESRIIFS NGKILQDMIL QLRNVESGEV EIQIEWINVT GSSDF
Arabidopsis Description
CAR8Protein C2-DOMAIN ABA-RELATED 8 [Source:UniProtKB/Swiss-Prot;Acc:O49303]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.