Factsheet for Bra017445.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01540.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04090	Canola	cytosol	100.0	100.0
AT2G01540.1	Thale cress	cytosol	94.44	94.44
Bra026650.1-P	Field mustard	cytosol	92.78	92.78
Bra024877.1-P	Field mustard	cytosol	92.78	92.78
VIT_01s0011g05230.t01	Wine grape	cytosol	60.0	65.06
Solyc06g053390.2.1	Tomato	cytosol, mitochondrion	60.0	64.67
PGSC0003DMT400042134	Potato	cytosol	47.22	62.96
Bra016186.1-P	Field mustard	cytosol	64.44	62.7
Bra016185.1-P	Field mustard	cytosol	55.56	60.61
Bra018410.1-P	Field mustard	mitochondrion	52.78	56.55
Bra028147.1-P	Field mustard	cytosol	52.78	56.55
KRG94240	Soybean	cytosol	52.22	55.62
Bra025441.1-P	Field mustard	cytosol	51.67	55.36
Bra024565.1-P	Field mustard	cytosol	48.33	54.38
Bra028148.1-P	Field mustard	mitochondrion	50.0	53.57
KRH38191	Soybean	cytosol	53.33	53.33
GSMUA_Achr10P...	Banana	cytosol	47.22	52.47
KRH50393	Soybean	cytosol	49.44	52.35
Bra004161.1-P	Field mustard	cytosol	50.56	52.0
PGSC0003DMT400020051	Potato	cytosol	47.22	51.83
EES01097	Sorghum	cytosol	47.78	51.81
GSMUA_Achr6P07630_001	Banana	cytosol	47.78	51.81
Bra014145.1-P	Field mustard	mitochondrion	48.89	51.76
Bra008104.1-P	Field mustard	cytosol, mitochondrion	47.78	51.19
KRG94243	Soybean	cytosol, mitochondrion	48.89	50.57
Os02t0327000-01	Rice	cytosol	46.11	50.3
PGSC0003DMT400059720	Potato	cytosol	46.67	50.3
Solyc04g007800.2.1	Tomato	cytosol	46.11	49.7
KRG89347	Soybean	cytosol	18.33	49.25
GSMUA_Achr2P15950_001	Banana	cytosol	47.22	49.13
Zm00001d011396_P001	Maize	cytosol	47.22	48.3
Bra001693.1-P	Field mustard	cytosol	46.67	47.46
TraesCS2B01G529400.1	Wheat	mitochondrion	43.89	46.47
TraesCS2D01G501800.2	Wheat	mitochondrion	43.89	46.47
TraesCS2A01G501300.1	Wheat	mitochondrion	43.33	45.88
HORVU0Hr1G039050.2	Barley	mitochondrion	42.22	44.97
Bra003941.1-P	Field mustard	cytosol	60.56	43.08
Zm00001d044179_P001	Maize	cytosol	47.22	42.29
Bra003940.1-P	Field mustard	cytosol	28.89	37.14
Bra029572.1-P	Field mustard	cytosol	36.67	23.91
Bra040041.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	36.67	19.7
Bra038783.1-P	Field mustard	cytosol	35.56	18.93
Bra013508.1-P	Field mustard	cytosol	36.11	16.54
Bra029688.1-P	Field mustard	cytosol	36.11	16.01
Bra024773.1-P	Field mustard	cytosol	25.56	15.86
Bra001277.1-P	Field mustard	cytosol	32.78	15.36

Protein Annotations

EnsemblPlants:Bra017445.1	EnsemblPlants:Bra017445.1-P	EnsemblPlantsGene:Bra017445	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR23180	PANTHER:PTHR23180:SF296	PFAM:PF00168	PFscan:PS50004
PRINTS:PR00360	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0002542345	UniProt:M4DLR4
MapMan:11.1.2.1.2	:	:	:	:	:

Description

AT2G01540 (E=1e-092) | C2 domain-containing protein

Coordinates

chrA09:+:15435481..15436341

Molecular Weight (calculated)

20095.3 Da

IEP (calculated)

6.759

GRAVY (calculated)

-0.284

Length

180 amino acids

Sequence
(BLAST)

001: MDQKPLGLLT IHVKRGINLA IRDHRSSDPY VVITVAEQTL KTRVIKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANID IQPYLDALKM
101: GMELLRLPNG CAIKRVQPSR LNCLSDESSI VWNNGKITQD MILRLNNVEC GEIEIMLEWH EGAGCRGVTS SSKGGVSSST

Best Arabidopsis Sequence Match ( AT2G01540.1 )
(BLAST)

001: MDQKPLGLLT IHVKRGINLA IRDHRSSDPY IVLNVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANID IQPYLEALKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD LILRLNNVEC GEIEIMLEWH EGAGCRGITS SSKGGGSSST

Arabidopsis Description

CAR10Protein C2-DOMAIN ABA-RELATED 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.