Factsheet for Bra040041.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22145	Canola	cytosol	100.0	87.47
AT3G07940.1	Thale cress	cytosol	89.85	78.18
Bra029688.1-P	Field mustard	cytosol	88.96	73.4
Bra001277.1-P	Field mustard	cytosol	83.58	72.92
KRH20756	Soybean	cytosol	66.87	60.87
KRH13401	Soybean	cytosol	66.27	60.33
KRH30029	Soybean	cytosol	69.55	59.59
KRH62915	Soybean	cytosol	59.4	56.7
GSMUA_Achr5P16180_001	Banana	cytosol	61.79	56.4
TraesCS1B01G251400.1	Wheat	cytosol	40.9	55.47
Solyc08g043140.2.1	Tomato	cytosol	65.37	55.44
VIT_13s0019g00350.t01	Wine grape	cytosol	65.37	55.3
PGSC0003DMT400068533	Potato	cytosol	65.07	55.19
GSMUA_Achr8P09660_001	Banana	cytosol, plastid	56.72	54.76
Os01t0951100-01	Rice	cytosol	55.82	49.08
EES18146	Sorghum	cytosol	56.12	48.83
Bra029572.1-P	Field mustard	cytosol	40.0	48.55
Zm00001d038063_P001	Maize	nucleus	54.63	47.53
TraesCS1A01G239200.1	Wheat	cytosol	52.24	46.67
TraesCS1D01G239400.3	Wheat	cytosol	52.24	46.3
Os05t0382000-01	Rice	cytosol	53.13	45.06
Bra038783.1-P	Field mustard	cytosol	44.18	43.79
HORVU1Hr1G057260.3	Barley	cytosol	51.04	41.81
Bra018410.1-P	Field mustard	mitochondrion	20.6	41.07
Bra004161.1-P	Field mustard	cytosol	20.9	40.0
Bra016185.1-P	Field mustard	cytosol	19.4	39.39
Bra028147.1-P	Field mustard	cytosol	19.7	39.29
Bra025441.1-P	Field mustard	cytosol	19.7	39.29
Bra008104.1-P	Field mustard	cytosol, mitochondrion	19.7	39.29
Bra016186.1-P	Field mustard	cytosol	21.49	38.92
Bra014145.1-P	Field mustard	mitochondrion	19.7	38.82
TraesCS3B01G548000.1	Wheat	cytosol	54.63	38.45
HORVU3Hr1G108480.1	Barley	cytosol	54.93	38.33
Bra028148.1-P	Field mustard	mitochondrion	18.81	37.5
Bra024565.1-P	Field mustard	cytosol	17.91	37.5
TraesCS3D01G494100.1	Wheat	cytosol	53.73	36.81
Bra017445.1-P	Field mustard	cytosol	19.7	36.67
Bra026650.1-P	Field mustard	cytosol	18.81	35.0
Bra001693.1-P	Field mustard	cytosol	18.21	34.46
Bra024877.1-P	Field mustard	cytosol	18.51	34.44
Bra013508.1-P	Field mustard	cytosol	40.0	34.1
Bra024773.1-P	Field mustard	cytosol	28.96	33.45
Bra003941.1-P	Field mustard	cytosol	23.88	31.62
Bra003940.1-P	Field mustard	cytosol	7.76	18.57
Zm00001d011855_P002	Maize	cytosol	53.13	16.94

Protein Annotations

Gene3D:2.60.40.150	Gene3D:3.30.40.160	MapMan:35.1	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
EnsemblPlantsGene:Bra040041	EnsemblPlants:Bra040041.1	EnsemblPlants:Bra040041.1-P	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	UniProt:M4FG16	PFAM:PF00168
PFAM:PF01412	PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF390
SMART:SM00105	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863	UniParc:UPI000254474E	:

Description

AT3G07940 (E=2e-163) | zinc finger and C2 domain protein, putative

Coordinates

chrA01:-:27818476..27820400

Molecular Weight (calculated)

37538.8 Da

IEP (calculated)

6.421

GRAVY (calculated)

-0.421

Length

335 amino acids

Sequence
(BLAST)

001: MSLGQEHDNP FEVSGSHACL YDLSLSLGVF ICIKCSGVHR SLGVHITKVL SVKLDDWTDD QVDMLAEYGG NTVVNQRFEA CNIDHLKKPK PDSNNDERND
101: FIRKKYELHQ FMDPKDCALC PYQQPSKIND STPSLCSANH RSTKNRIGNA FRNSWGRRES DHKGHKKSNS LAGMIEFVGL IKVNVVKGTN LAVRDVMTSD
201: PYVILTLGQQ SVKTRVIKNN LNPVWNETLM LSIPEQMPPL KVLVYDKDTF STDDFMGEAE IDIQPLVSAA KAYETSSIKE PMQLGSWVAS KENTLVSDGI
301: ISQEEGKVKQ DISLRLQKVE RGVLEIQLEC VPLTQ

Best Arabidopsis Sequence Match ( AT3G07940.1 )
(BLAST)

001: MSLGQENVDP VEVSGSHACL YELLCSETPK WTPLRVEDLQ TSSSDPRDRL EKLLKQPGNK YCADCGSPEP KWVSLSLGVF ICIKCSGVHR SLGVHISKVL
101: SVKLDEWTDD QVDMLVGYGG NTAVNERFEA CNIDQSKKPK PDSTNEERND FIRKKYEQHQ FMDPKDGALC TYQQPSRTNT SPPSLCSASH RSTKNRIGHA
201: FRNSWGRRES DHKGPKKSNS MAGMVEFVGL IKVNVVKGTN LAVRDVMTSD PYVILALGQQ SVKTRVIKNN LNPVWNETLM LSIPEPMPPL KVLVYDKDTF
301: STDDFMGEAE IDIQPLVSAA KAYETSSIKE PMQLGSWVAS KENTLVSDGI ILLEDGKVKQ DISLRLQNVE RGVLEIQLEC LPLTQ

Arabidopsis Description

AGD11Probable ADP-ribosylation factor GTPase-activating protein AGD11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.