CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038063_P001	Maize	nucleus	92.73	92.73
TraesCS1A01G239200.1	Wheat	cytosol	72.47	74.4
TraesCS1D01G239400.3	Wheat	cytosol	72.21	73.55
Os05t0382000-01	Rice	cytosol	74.03	72.15
TraesCS1B01G251400.1	Wheat	cytosol	45.97	71.66
HORVU1Hr1G057260.3	Barley	cytosol	71.43	67.24
GSMUA_Achr5P16180_001	Banana	cytosol	56.88	59.67
CDY69110	Canola	cytosol	14.55	59.57
GSMUA_Achr8P09660_001	Banana	cytosol, plastid	51.69	57.35
Bra040041.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	48.83	56.12
CDY22145	Canola	cytosol	54.29	54.57
KRH30029	Soybean	cytosol	54.29	53.45
AT3G07940.1	Thale cress	cytosol	52.73	52.73
KRH20756	Soybean	cytosol	49.87	52.17
KRH13401	Soybean	cytosol	49.87	52.17
VIT_13s0019g00350.t01	Wine grape	cytosol	53.25	51.77
CDX74022	Canola	cytosol	51.17	51.3
Bra001277.1-P	Field mustard	cytosol	50.91	51.04
KRH62915	Soybean	cytosol	44.94	49.29
CDY28007	Canola	cytosol	51.95	49.26
PGSC0003DMT400068533	Potato	cytosol	50.39	49.11
Solyc08g043140.2.1	Tomato	cytosol	50.39	49.11
CDY35974	Canola	cytosol	51.43	48.77
Bra029688.1-P	Field mustard	cytosol	51.17	48.52
EER88634	Sorghum	cytosol	40.78	47.43
KXG29722	Sorghum	cytosol	37.66	46.33
EES01097	Sorghum	cytosol	19.74	45.78
EES05611	Sorghum	cytosol	36.88	42.77
EER97836	Sorghum	cytosol	18.18	42.42
EER97258	Sorghum	mitochondrion	15.58	35.93
EER99403	Sorghum	cytosol	15.58	35.09
OQU88318	Sorghum	mitochondrion	16.88	26.0

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	EntrezGene:8076825	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:C2_dom	InterPro:C2_domain_sf	UniProt:C5YXD0	EnsemblPlants:EES18146	ProteinID:EES18146
ProteinID:EES18146.1	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508
PFAM:PF00168	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180
PANTHER:PTHR23180:SF390	SMART:SM00105	SMART:SM00239	EnsemblPlantsGene:SORBI_3009G121200	SUPFAM:SSF49562	SUPFAM:SSF57863
UniParc:UPI0001A88D9E	RefSeq:XP_002439716.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:47180753..47183979

Molecular Weight (calculated)

43409.1 Da

IEP (calculated)

5.630

GRAVY (calculated)

-0.636

Length

385 amino acids

Sequence
(BLAST)

001: MERQGMEGNN LLHFLNTPSA HYSRTCDRFE AQQGGDDNSE TSDTDPANAR EMLEYLLNQP ANKYCADCGN PDPKWAALPF GAFICIKCSG THRSLGVHIS
101: KVISVNLDDW TDEEVNCLAE SGGNSVVNTR FEAFLPENKK PKHDCSTEER NDFIRKKYQF QQFVCDPQFS CPLPLNRKHA PPDKSHQQHN SSKYGFGHTF
201: RNSWRKKDSD NKGLKKMSDV GMIEFVGLIK VNIVKGTDLA VRDVMSSDPY VMINLGHQSM KTRVIKNTLN PIWNERLMLS IPDPIPPLKL QVFDKDTFSS
301: DDRMGEAEVD IRPLIAATKE HENSTITEPT ELYRWSASED SNGVLAKDSV ISVANGNVKQ EITLKLQNVE RGEIEIEIEC VPLSQ

Best Arabidopsis Sequence Match ( AT3G07940.1 )
(BLAST)

001: MSLGQENVDP VEVSGSHACL YELLCSETPK WTPLRVEDLQ TSSSDPRDRL EKLLKQPGNK YCADCGSPEP KWVSLSLGVF ICIKCSGVHR SLGVHISKVL
101: SVKLDEWTDD QVDMLVGYGG NTAVNERFEA CNIDQSKKPK PDSTNEERND FIRKKYEQHQ FMDPKDGALC TYQQPSRTNT SPPSLCSASH RSTKNRIGHA
201: FRNSWGRRES DHKGPKKSNS MAGMVEFVGL IKVNVVKGTN LAVRDVMTSD PYVILALGQQ SVKTRVIKNN LNPVWNETLM LSIPEPMPPL KVLVYDKDTF
301: STDDFMGEAE IDIQPLVSAA KAYETSSIKE PMQLGSWVAS KENTLVSDGI ILLEDGKVKQ DISLRLQNVE RGVLEIQLEC LPLTQ

Arabidopsis Description

AGD11Probable ADP-ribosylation factor GTPase-activating protein AGD11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.