CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13401	Soybean	cytosol	94.84	94.84
KRH30029	Soybean	cytosol	76.36	71.87
KRH62915	Soybean	cytosol	64.4	67.52
Bra040041.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	60.87	66.87
GSMUA_Achr5P16180_001	Banana	cytosol	64.13	64.31
GSMUA_Achr8P09660_001	Banana	cytosol, plastid	60.6	64.27
AT3G07940.1	Thale cress	cytosol	65.49	62.6
CDY22145	Canola	cytosol	64.95	62.4
Solyc08g043140.2.1	Tomato	cytosol	65.76	61.27
PGSC0003DMT400068533	Potato	cytosol	65.76	61.27
VIT_13s0019g00350.t01	Wine grape	cytosol	64.67	60.1
Bra001277.1-P	Field mustard	cytosol	61.96	59.38
CDX74022	Canola	cytosol	61.68	59.11
Bra029688.1-P	Field mustard	cytosol	64.95	58.87
CDY35974	Canola	cytosol	64.67	58.62
CDY28007	Canola	cytosol	64.4	58.37
TraesCS1B01G251400.1	Wheat	cytosol	37.5	55.87
Os01t0951100-01	Rice	cytosol	55.16	53.28
TraesCS1A01G239200.1	Wheat	cytosol	52.17	51.2
TraesCS1D01G239400.3	Wheat	cytosol	52.17	50.79
Zm00001d038063_P001	Maize	nucleus	52.72	50.39
EES18146	Sorghum	cytosol	52.17	49.87
Os05t0382000-01	Rice	cytosol	53.26	49.62
KRH42994	Soybean	cytosol	43.48	48.78
KRH59111	Soybean	cytosol	42.93	48.17
KRH36796	Soybean	cytosol	42.12	47.84
KRH11784	Soybean	cytosol	41.58	47.22
KRH25661	Soybean	cytosol	8.42	46.97
HORVU1Hr1G057260.3	Barley	cytosol	51.09	45.97
KRG97928	Soybean	cytosol	19.57	43.64
KRH30951	Soybean	cytosol	19.02	42.42
TraesCS3B01G548000.1	Wheat	cytosol	54.62	42.23
KRG89347	Soybean	cytosol	7.61	41.79
HORVU3Hr1G108480.1	Barley	cytosol	54.35	41.67
KRH48640	Soybean	cytosol	19.84	41.48
KRH71995	Soybean	cytosol	12.23	41.28
KRG94240	Soybean	cytosol	18.75	40.83
TraesCS3D01G494100.1	Wheat	cytosol	53.8	40.49
KRH36617	Soybean	cytosol	18.21	40.36
KRH11612	Soybean	cytosol	17.93	39.76
KRH38191	Soybean	cytosol	19.02	38.89
KRH41845	Soybean	cytosol	16.85	37.58
KRH60540	Soybean	cytosol	17.39	36.99
KRG94243	Soybean	cytosol, mitochondrion	17.39	36.78
KRH51202	Soybean	cytosol	16.58	36.75
KRH39062	Soybean	cytosol	10.87	36.7
KRH39078	Soybean	endoplasmic reticulum, extracellular	19.57	35.29
KRH50393	Soybean	cytosol	16.3	35.29
Zm00001d011855_P002	Maize	cytosol	53.53	18.74

Protein Annotations

EntrezGene:100789552	Gene3D:2.60.40.150	Gene3D:3.30.40.160	MapMan:35.1	EMBL:ACUP02008302	InterPro:ARFGAP/RecO
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlantsGene:GLYMA_13G198600	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	UniProt:K7M0S1	EnsemblPlants:KRH20756
ProteinID:KRH20756	ProteinID:KRH20756.1	ProteinID:KRH20757.1	PFAM:PF00168	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF390	SMART:SM00105	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF57863	UniParc:UPI000233C304	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:31233913..31240731

Molecular Weight (calculated)

41228.5 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.377

Length

368 amino acids

Sequence
(BLAST)

001: MSIQHENPET KDVICPQKRI ADLMHHAGNK FCADCGTPEP RWVSSSLGVF ICIKCSGIHR SLGVHISKVL SLKLDEWTDE QVDALAKLGG NTLLNKKYEA
101: CLPSNIRKPK PHSSIEERSE FIRRKYEMQQ FVDCDDNLSC PIIPSQGRSI SLALAQSSTS YYNSFMDKKP SEKQQSKHRI GNAFRNSWGR KDSEHKAAKK
201: STSLAGMVEF VGLIKVNVVK GTHLAIRDVM TSDPYVILSL GHQSVKTRVI KSNLNPVWNE SLMLSIPENI PPLKVLVYDK DTFSTDDFMG EAEIDIQPLV
301: IAAKAYEKSN INESMQLGKF VASNDNTLVR DGIISLDEGK IKQEISVRLQ NIERGELELE LECVPLTQ

Best Arabidopsis Sequence Match ( AT3G07940.1 )
(BLAST)

001: MSLGQENVDP VEVSGSHACL YELLCSETPK WTPLRVEDLQ TSSSDPRDRL EKLLKQPGNK YCADCGSPEP KWVSLSLGVF ICIKCSGVHR SLGVHISKVL
101: SVKLDEWTDD QVDMLVGYGG NTAVNERFEA CNIDQSKKPK PDSTNEERND FIRKKYEQHQ FMDPKDGALC TYQQPSRTNT SPPSLCSASH RSTKNRIGHA
201: FRNSWGRRES DHKGPKKSNS MAGMVEFVGL IKVNVVKGTN LAVRDVMTSD PYVILALGQQ SVKTRVIKNN LNPVWNETLM LSIPEPMPPL KVLVYDKDTF
301: STDDFMGEAE IDIQPLVSAA KAYETSSIKE PMQLGSWVAS KENTLVSDGI ILLEDGKVKQ DISLRLQNVE RGVLEIQLEC LPLTQ

Arabidopsis Description

AGD11Probable ADP-ribosylation factor GTPase-activating protein AGD11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.