Factsheet for Bra029572.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39164	Canola	cytosol, mitochondrion, nucleus	99.64	80.88
CDY46364	Canola	cytosol, mitochondrion, nucleus	100.0	80.0
AT4G05330.1	Thale cress	cytosol, mitochondrion, nucleus	95.65	78.57
Bra038783.1-P	Field mustard	cytosol	84.78	69.23
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	79.35	66.16
Os06t0609450-01	Rice	cytosol	32.97	65.94
VIT_10s0003g04900.t01	Wine grape	cytosol	78.26	65.45
KRH71995	Soybean	cytosol	25.0	63.3
HORVU6Hr1G032940.1	Barley	cytosol	65.94	56.35
KXG29722	Sorghum	cytosol	63.41	55.91
TraesCS6B01G190600.1	Wheat	cytosol	65.22	55.73
TraesCS6A01G160700.1	Wheat	cytosol	65.22	55.73
Os02t0198300-02	Rice	plasma membrane	64.13	55.31
EER88634	Sorghum	cytosol	66.3	55.29
TraesCS6A01G285400.2	Wheat	golgi	65.94	54.82
Bra013508.1-P	Field mustard	cytosol	77.17	54.2
EES05611	Sorghum	cytosol	64.49	53.61
Os02t0722500-01	Rice	cytosol	64.13	53.31
TraesCS6D01G152000.1	Wheat	cytosol	64.86	52.49
Zm00001d034981_P001	Maize	cytosol	34.78	50.26
Bra024773.1-P	Field mustard	cytosol	52.17	49.66
Bra028147.1-P	Field mustard	cytosol	27.9	45.83
Bra028148.1-P	Field mustard	mitochondrion	27.17	44.64
GSMUA_Achr7P20210_001	Banana	cytosol	35.87	44.0
Bra025441.1-P	Field mustard	cytosol	26.45	43.45
Bra018410.1-P	Field mustard	mitochondrion	26.09	42.86
Bra008104.1-P	Field mustard	cytosol, mitochondrion	25.72	42.26
Bra024565.1-P	Field mustard	cytosol	24.28	41.88
TraesCS6D01G265900.2	Wheat	cytosol	65.94	41.55
Bra016185.1-P	Field mustard	cytosol	24.64	41.21
Bra014145.1-P	Field mustard	mitochondrion	25.36	41.18
HORVU6Hr1G071850.3	Barley	mitochondrion	65.58	41.04
Bra004161.1-P	Field mustard	cytosol	25.72	40.57
Bra001693.1-P	Field mustard	cytosol	25.72	40.11
Bra040041.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	48.55	40.0
Bra016186.1-P	Field mustard	cytosol	26.45	39.46
TraesCS6B01G314300.1	Wheat	cytosol	63.04	38.93
Bra024877.1-P	Field mustard	cytosol	25.0	38.33
Bra001277.1-P	Field mustard	cytosol	51.81	37.24
Bra017445.1-P	Field mustard	cytosol	23.91	36.67
Bra029688.1-P	Field mustard	cytosol	53.26	36.21
Bra026650.1-P	Field mustard	cytosol	23.55	36.11
Zm00001d005398_P001	Maize	cytosol	42.03	32.22
Zm00001d007340_P001	Maize	cytosol	39.49	29.38
Bra003941.1-P	Field mustard	cytosol	24.28	26.48
Bra003940.1-P	Field mustard	cytosol	7.97	15.71

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
EnsemblPlantsGene:Bra029572	EnsemblPlants:Bra029572.1	EnsemblPlants:Bra029572.1-P	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508
UniProt:M4ELA4	PFAM:PF00168	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115
PANTHER:PTHR23180	PANTHER:PTHR23180:SF245	SMART:SM00105	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863
UniParc:UPI00025425AB	:	:	:	:	:

Description

AT4G05330 (E=1e-090) AGD13 | AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding

Coordinates

chrA09:+:16936921..16938593

Molecular Weight (calculated)

30332.2 Da

IEP (calculated)

4.212

GRAVY (calculated)

-0.224

Length

276 amino acids

Sequence
(BLAST)

001: MSNYSAGLGK PGSGKRRIRD LLNQPDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDDWSDEEV DSMIEIGGNA SANSIYEAFV
101: PEGSSKPGPD FEEGMVEFIG LLKVTVKKGT NLAIRDMMSS DPYVVLNLGK QKLQTTVVNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA
201: ELDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ

Best Arabidopsis Sequence Match ( AT4G05330.3 )
(BLAST)

001: MSNYAAGLGK PGSGKRRIRD LLNQPDNRVC ADCGASDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFL
101: PDTCSKPGPD VNHDQRMRFI RAKYELQEFL KPSLRITSGK GSTKSSAFLT SSLSRKIMDS FRTNSSSQTM FQEGMVEFIG LLKVTIKKGT NLAIRDMMSS
201: DPYVVLNLGK QKLQTTVMNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS
301: IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ

Arabidopsis Description

AGD13AGD13 [Source:UniProtKB/TrEMBL;Acc:A0A178V602]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.