Factsheet for VIT_10s0003g04900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029572.1-P	Field mustard	cytosol	65.45	78.26
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	77.27	77.04
KRH36796	Soybean	cytosol	74.85	76.23
KRH11784	Soybean	cytosol	74.85	76.23
CDX82807	Canola	cytosol	71.21	74.37
AT4G21160.4	Thale cress	cytosol, mitochondrion, nucleus	75.45	73.89
CDX76421	Canola	cytosol	73.33	73.56
Bra038783.1-P	Field mustard	cytosol	74.24	72.49
CDY58481	Canola	cytosol, mitochondrion, nucleus	74.24	72.49
CDY21329	Canola	mitochondrion	73.94	72.4
CDY62002	Canola	mitochondrion	73.94	72.4
CDX94026	Canola	cytosol, mitochondrion, nucleus	73.94	72.19
AT4G05330.1	Thale cress	cytosol, mitochondrion, nucleus	73.33	72.02
CDY46364	Canola	cytosol, mitochondrion, nucleus	75.15	71.88
KRH59111	Soybean	cytosol	71.21	71.65
KRH42994	Soybean	cytosol	70.61	71.04
CDY39164	Canola	cytosol, mitochondrion, nucleus	72.73	70.59
EER88634	Sorghum	cytosol	67.58	67.37
KRH71995	Soybean	cytosol	22.12	66.97
Os06t0609450-01	Rice	cytosol	27.88	66.67
HORVU6Hr1G032940.1	Barley	cytosol	64.85	66.25
CDY65341	Canola	plastid	74.24	66.04
TraesCS6A01G160700.1	Wheat	cytosol	64.55	65.94
KXG29722	Sorghum	cytosol	62.42	65.81
TraesCS6B01G190600.1	Wheat	cytosol	64.24	65.63
Os02t0198300-02	Rice	plasma membrane	62.73	64.69
TraesCS6A01G285400.2	Wheat	golgi	63.94	63.55
EES05611	Sorghum	cytosol	63.33	62.95
TraesCS6D01G152000.1	Wheat	cytosol	64.55	62.46
GSMUA_Achr7P20210_001	Banana	cytosol	42.12	61.78
Zm00001d034981_P001	Maize	cytosol	35.45	61.26
Os02t0722500-01	Rice	cytosol	60.91	60.54
Bra013508.1-P	Field mustard	cytosol	66.36	55.73
Bra024773.1-P	Field mustard	cytosol	43.33	49.31
TraesCS6D01G265900.2	Wheat	cytosol	63.94	48.17
HORVU6Hr1G071850.3	Barley	mitochondrion	63.33	47.39
TraesCS6B01G314300.1	Wheat	cytosol	61.82	45.64
VIT_00s0531g00030.t01	Wine grape	cytosol	21.82	43.64
VIT_01s0011g05230.t01	Wine grape	cytosol	21.82	43.37
VIT_13s0019g00350.t01	Wine grape	cytosol	51.82	43.18
VIT_14s0006g01250.t01	Wine grape	cytosol	21.52	43.03
VIT_17s0000g02290.t01	Wine grape	cytosol, plastid	23.03	41.99
Zm00001d005398_P001	Maize	cytosol	44.55	40.83
CDY60369	Canola	cytosol	22.12	39.25
Zm00001d007340_P001	Maize	cytosol	42.73	38.01
CDX79040	Canola	cytosol, mitochondrion, nucleus, plastid	71.21	33.33

Protein Annotations

EntrezGene:100268078	wikigene:100268078	Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO
InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CBI31017	ProteinID:CBI31017.3
UniProt:D7TKJ5	EMBL:FN595992	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892
InterPro:IPR038508	EntrezGene:LOC100268078	wikigene:LOC100268078	PFAM:PF00168	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF245	SMART:SM00105	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF57863	UniParc:UPI0001BE3636	ArrayExpress:VIT_10s0003g04900	EnsemblPlantsGene:VIT_10s0003g04900	EnsemblPlants:VIT_10s0003g04900.t01
unigene:Vvi.17767	RefSeq:XP_002263067	RefSeq:XP_002263067.2	RefSeq:XP_010655743.1	RefSeq:XP_010655744.1	RefSeq:XP_010655745.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:8790428..8800301

Molecular Weight (calculated)

36659.0 Da

IEP (calculated)

5.012

GRAVY (calculated)

-0.257

Length

330 amino acids

Sequence
(BLAST)

001: MSDRPYELGR PASGKRRLKD LLLKSDNRTC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV ALDDWSDDEI DAMVEVGGNS SANSIYEAFI
101: PEGVTKPKPN SSHEERMRFI RSKYELQEFL KPSLRIASVS SGKSSLQSSF SRKLMDNFRS SNSQKLEGMV EYIGLLKVKV IRGKNLAVRD MLSSDPYVVL
201: TLGPQTVQTQ VITSNLNPVW NEELMLSVPM DYGPIKVKVF DHDTFSADDI MGEAEIDIQP LITSAMAFGN AEMFGDMQIG KWLKSHDNAL LEDSIINIIG
301: GKVKQEVQLK LQNVESGELD LEIEWLPLDQ

Best Arabidopsis Sequence Match ( AT4G21160.4 )
(BLAST)

001: MSYSGAGLGK PGSGKRRIRD LLTQSDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GSHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFI
101: PEGSSKPGPD ASHDQRMRFI RSKYEHQEFL KPSLRITSVR GSSTKTPAFL SSSLSKKIVD SFRTNSSSQQ PQLEGMVEFI GLLKVTIKKG TNMAIRDMMS
201: SDPYVVLTLG QQKAQSTVVK SNLNPVWNEE LMLSVPHNYG SVKLQVFDYD TFSADDIMGE AEIDIQPLIT SAMAFGDPEM FGDMQIGKWL KSHDNALIED
301: SIINIADGKV KQEVQIKLQN VESGELELEM EWLPLEQ

Arabidopsis Description

AGD12ZAC [Source:UniProtKB/TrEMBL;Acc:A0A178UUS8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.