Factsheet for VIT_00s0531g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11612	Soybean	cytosol	78.18	77.71
KRH36617	Soybean	cytosol	78.18	77.71
AT5G47710.1	Thale cress	cytosol	76.97	76.51
KRH25661	Soybean	cytosol	30.3	75.76
KRH51202	Soybean	cytosol	73.94	73.49
PGSC0003DMT400038836	Potato	cytosol	72.73	71.01
Solyc04g015070.2.1	Tomato	cytosol	70.91	69.23
PGSC0003DMT400034618	Potato	cytosol	70.3	69.05
CDY40545	Canola	endoplasmic reticulum, extracellular	75.76	63.13
GSMUA_Achr4P13040_001	Banana	cytosol	64.85	62.57
GSMUA_Achr2P05420_001	Banana	cytosol	51.52	56.29
TraesCS5A01G169300.1	Wheat	cytosol	56.97	54.97
TraesCS5B01G166000.1	Wheat	cytosol	56.97	54.97
Os09t0251800-01	Rice	cytosol, plasma membrane	56.36	54.39
TraesCS5D01G173700.1	Wheat	cytosol	56.36	54.39
Zm00001d019836_P003	Maize	cytosol	58.18	51.06
VIT_14s0006g01250.t01	Wine grape	cytosol	42.42	42.42
HORVU5Hr1G052010.2	Barley	cytosol	55.15	40.27
VIT_01s0011g05230.t01	Wine grape	cytosol	40.0	39.76
VIT_17s0000g02290.t01	Wine grape	cytosol, plastid	41.82	38.12
HORVU5Hr1G052030.1	Barley	cytosol	55.15	37.92
VIT_10s0003g04900.t01	Wine grape	cytosol	43.64	21.82
VIT_13s0019g00350.t01	Wine grape	cytosol	39.39	16.41

Protein Annotations

EntrezGene:100251803	wikigene:100251803	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CBI33247	ProteinID:CBI33247.3	UniProt:D7TRX1	EMBL:FN596056	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0016020	InterPro:IPR000008
InterPro:IPR035892	EntrezGene:LOC100251803	wikigene:LOC100251803	PFAM:PF00168	PRINTS:PR00360	PFscan:PS50004
PANTHER:PTHR23180	PANTHER:PTHR23180:SF245	SMART:SM00239	SUPFAM:SSF49562	TIGR:TC59350	UniParc:UPI00015CE020
ArrayExpress:VIT_00s0531g00030	EnsemblPlantsGene:VIT_00s0531g00030	EnsemblPlants:VIT_00s0531g00030.t01	unigene:Vvi.8912	RefSeq:XP_002275013	RefSeq:XP_002275013.1
RefSeq:XP_010647161.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:31395829..31397399

Molecular Weight (calculated)

18217.4 Da

IEP (calculated)

6.504

GRAVY (calculated)

0.057

Length

165 amino acids

Sequence
(BLAST)

001: MGEPVGMLKV IVVQGKRLVI RDFKSSDPYV IVKLGNQTAK TKVINSCLNP VWNEELSFSL MDPVGVLYLE VFDKDRFKAD DKMGHAHLSL QPIVSAARLR
101: QILGVSSGET TLRKVIPDPD NCLVRESCVS CINGEVVQDV WLRLCGVESG EIQLQIKLMD PPAAP

Best Arabidopsis Sequence Match ( AT5G47710.4 )
(BLAST)

001: MGEPLGLLQV TVIQGKKLVI RDFKSSDPYV IVKLGNESAK TKVINNCLNP VWNEELNFTL KDPAAVLALE VFDKDRFKAD DKMGHASLSL QPLISVARLR
101: HVVRVSSGET TLRKVLPDPE NCVSRESTIS CIDGEVVQSV WLRLCAVESG EIELKIKLID PPGTNK

Arabidopsis Description

CAR11Protein C2-DOMAIN ABA-RELATED 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIK8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.