CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76421	Canola	cytosol	87.97	84.5
AT4G21160.4	Thale cress	cytosol, mitochondrion, nucleus	88.92	83.38
CDY58481	Canola	cytosol, mitochondrion, nucleus	88.61	82.84
CDX94026	Canola	cytosol, mitochondrion, nucleus	88.29	82.54
CDY65341	Canola	plastid	89.24	76.01
CDY21329	Canola	mitochondrion	81.01	75.96
CDY62002	Canola	mitochondrion	80.7	75.67
CDY46364	Canola	cytosol, mitochondrion, nucleus	81.33	74.49
CDY39164	Canola	cytosol, mitochondrion, nucleus	79.11	73.53
Bra013508.1-P	Field mustard	cytosol	88.92	71.5
VIT_10s0003g04900.t01	Wine grape	cytosol	74.37	71.21
Solyc02g024020.2.1	Tomato	cytosol, mitochondrion	73.1	69.79
KRH71995	Soybean	cytosol	23.1	66.97
Os06t0609450-01	Rice	cytosol	29.11	66.67
EER88634	Sorghum	cytosol	65.19	62.24
HORVU6Hr1G032940.1	Barley	cytosol	62.66	61.3
Os02t0198300-02	Rice	plasma membrane	62.03	61.25
TraesCS6B01G190600.1	Wheat	cytosol	62.34	60.99
TraesCS6A01G160700.1	Wheat	cytosol	62.03	60.68
KXG29722	Sorghum	cytosol	59.81	60.38
EES05611	Sorghum	cytosol	62.03	59.04
TraesCS6A01G285400.2	Wheat	golgi	62.03	59.04
TraesCS6D01G152000.1	Wheat	cytosol	62.03	57.48
Os02t0722500-01	Rice	cytosol	59.81	56.93
Zm00001d034981_P001	Maize	cytosol	34.18	56.54
GSMUA_Achr7P20210_001	Banana	cytosol	37.97	53.33
CDY69110	Canola	cytosol	15.82	53.19
TraesCS6D01G265900.2	Wheat	cytosol	62.03	44.75
HORVU6Hr1G071850.3	Barley	mitochondrion	62.03	44.44
CDX79040	Canola	cytosol, mitochondrion, nucleus, plastid	98.42	44.11
CDY22145	Canola	cytosol	51.27	42.3
TraesCS6B01G314300.1	Wheat	cytosol	59.18	41.83
CDX82060	Canola	mitochondrion	22.15	41.67
CDY47746	Canola	mitochondrion	22.15	41.67
CDY01709	Canola	mitochondrion	21.84	41.07
CDX74561	Canola	mitochondrion	21.52	40.48
CDX74562	Canola	cytosol	21.2	40.12
CDX74022	Canola	cytosol	48.73	40.1
CDX99693	Canola	cytosol	21.2	39.88
CDY60369	Canola	cytosol	23.42	39.78
CDX77307	Canola	mitochondrion	21.2	39.41
CDY04090	Canola	cytosol	22.15	38.89
CDY70365	Canola	cytosol	22.15	38.89
CDY58016	Canola	cytosol	22.15	38.89
CDY16452	Canola	mitochondrion	20.89	38.82
CDX96279	Canola	cytosol	20.25	38.79
CDY11543	Canola	cytosol	20.25	38.79
CDY71117	Canola	cytosol	19.62	38.75
CDY27005	Canola	cytosol	20.57	38.69
CDY38572	Canola	mitochondrion	20.57	38.69
CDY35974	Canola	cytosol	49.37	38.42
CDY51927	Canola	cytosol	21.52	38.42
CDY11544	Canola	cytosol	22.47	38.38
CDY17665	Canola	cytosol	21.84	38.33
CDY07499	Canola	cytosol	21.2	38.29
CDX96152	Canola	cytosol	21.2	38.29
CDY28007	Canola	cytosol	49.05	38.18
CDY71433	Canola	cytosol	19.3	38.12
CDY04742	Canola	cytosol	19.3	38.12
CDY27654	Canola	cytosol	21.52	37.99
CDX75953	Canola	cytosol	21.2	37.85
CDX96278	Canola	cytosol	22.15	37.84
CDY48816	Canola	cytosol	21.52	37.78
CDY09436	Canola	cytosol	21.52	37.78
Zm00001d005398_P001	Maize	cytosol	43.04	37.78
CDY23479	Canola	cytosol	20.57	35.14
Zm00001d007340_P001	Maize	cytosol	39.87	33.96
CDY40545	Canola	endoplasmic reticulum, extracellular	21.2	33.84
CDY49631	Canola	extracellular	11.71	30.83
CDY70119	Canola	cytosol	22.47	28.06
CDY23477	Canola	cytosol	10.13	25.6
CDY01706	Canola	golgi, mitochondrion, plasma membrane, plastid	17.41	23.31
CDX68329	Canola	cytosol	7.59	17.39
CDY23476	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	GO:A0A078D104	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:C2_dom	InterPro:C2_domain_sf	EnsemblPlants:CDX82807	ProteinID:CDX82807	ProteinID:CDX82807.1
GO:GO:0003674	GO:GO:0005096	GO:GO:0008150	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00138147001	InterPro:IPR000008
InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	PFAM:PF00168	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF245	SMART:SM00105	SMART:SM00239
SUPFAM:SSF49562	SUPFAM:SSF57863	UniParc:UPI0004EE3009	SEG:seg	:	:

Description

BnaC01g12570D

Coordinates

chrLK031830:+:434423..436562

Molecular Weight (calculated)

34743.2 Da

IEP (calculated)

4.715

GRAVY (calculated)

-0.288

Length

316 amino acids

Sequence
(BLAST)

001: MSYSAAGQGK NSSGKRRISD LLTQSDNRVC ADCSAPDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDDEV DSMIEIGGNA SANSVYEAFI
101: PDGVSKPGPD ASLDQRMQFI RSKYEHQEFL KPSLRITSVK GSNSSSSQQP HLEGMVEFIG LLKVTLKKGT NLAVRDMRTS DSYVVLTLGQ QTAKSTVMKS
201: NLNPVWNEEL MLSVPHDYGS VKLQVFDYDA FSGDDIMGEA GIDIQPLITS AMAFGDPEMF GDMQIGKWLK SRDNALIEDS IINIADGKVK QEVHIKLQNV
301: ESGELELELE WLRLDQ

Best Arabidopsis Sequence Match ( AT4G05330.3 )
(BLAST)

001: MSNYAAGLGK PGSGKRRIRD LLNQPDNRVC ADCGASDPKW ASANIGVFIC LKCCGVHRSL GTHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFL
101: PDTCSKPGPD VNHDQRMRFI RAKYELQEFL KPSLRITSGK GSTKSSAFLT SSLSRKIMDS FRTNSSSQTM FQEGMVEFIG LLKVTIKKGT NLAIRDMMSS
201: DPYVVLNLGK QKLQTTVMNS NLNPVWNQEL MLSVPESYGP VKLQVYDYDT FSADDIMGEA DIDIQPLITS AMAFGDPEMF GDMQIGKWLK SHDNPLIDDS
301: IINIVDGKVK QEVQIKLQNV ESGELELEME WLPLDQ

Arabidopsis Description

AGD13AGD13 [Source:UniProtKB/TrEMBL;Acc:A0A178V602]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.