Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01540.1 | CDX73496 | AT3G54220.1 | 19228333 |
| AT2G01540.1 | CDX78219 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024877.1-P | Field mustard | cytosol | 99.44 | 99.44 |
| CDY58016 | Canola | cytosol | 99.44 | 99.44 |
| AT2G01540.1 | Thale cress | cytosol | 93.33 | 93.33 |
| CDY04090 | Canola | cytosol | 92.22 | 92.22 |
| CDY09436 | Canola | cytosol | 91.11 | 91.11 |
| CDY48816 | Canola | cytosol | 91.11 | 91.11 |
| CDY70365 | Canola | cytosol | 90.56 | 90.56 |
| CDY11544 | Canola | cytosol | 62.78 | 61.08 |
| CDX96279 | Canola | cytosol | 55.56 | 60.61 |
| CDY11543 | Canola | cytosol | 55.56 | 60.61 |
| CDX96278 | Canola | cytosol | 62.22 | 60.54 |
| CDY23479 | Canola | cytosol | 58.33 | 56.76 |
| CDY01709 | Canola | mitochondrion | 52.78 | 56.55 |
| CDX74562 | Canola | cytosol | 52.22 | 56.29 |
| CDY38572 | Canola | mitochondrion | 52.22 | 55.95 |
| CDY27005 | Canola | cytosol | 52.22 | 55.95 |
| CDY71117 | Canola | cytosol | 48.89 | 55.0 |
| CDX74561 | Canola | mitochondrion | 51.11 | 54.76 |
| CDY71433 | Canola | cytosol | 48.33 | 54.38 |
| CDY04742 | Canola | cytosol | 48.33 | 54.38 |
| CDX96152 | Canola | cytosol | 52.22 | 53.71 |
| CDX99693 | Canola | cytosol | 50.0 | 53.57 |
| EES01097 | Sorghum | cytosol | 48.89 | 53.01 |
| CDY07499 | Canola | cytosol | 51.11 | 52.57 |
| CDY27654 | Canola | cytosol | 52.22 | 52.51 |
| GSMUA_Achr10P... | Banana | cytosol | 47.22 | 52.47 |
| CDY47746 | Canola | mitochondrion | 47.78 | 51.19 |
| CDX82060 | Canola | mitochondrion | 47.78 | 51.19 |
| CDY16452 | Canola | mitochondrion | 48.33 | 51.18 |
| CDX77307 | Canola | mitochondrion | 48.33 | 51.18 |
| GSMUA_Achr6P07630_001 | Banana | cytosol | 46.67 | 50.6 |
| Os02t0327000-01 | Rice | cytosol | 46.11 | 50.3 |
| Zm00001d011396_P001 | Maize | cytosol | 48.33 | 49.43 |
| CDY51927 | Canola | cytosol | 47.78 | 48.59 |
| CDY23477 | Canola | cytosol | 33.33 | 48.0 |
| GSMUA_Achr2P15950_001 | Banana | cytosol | 46.11 | 47.98 |
| TraesCS2D01G501800.2 | Wheat | mitochondrion | 45.0 | 47.65 |
| CDX75953 | Canola | cytosol | 46.67 | 47.46 |
| TraesCS2A01G501300.1 | Wheat | mitochondrion | 44.44 | 47.06 |
| TraesCS2B01G529400.1 | Wheat | mitochondrion | 44.44 | 47.06 |
| HORVU0Hr1G039050.2 | Barley | mitochondrion | 43.33 | 46.15 |
| Zm00001d044179_P001 | Maize | cytosol | 47.78 | 42.79 |
| CDY70119 | Canola | cytosol | 58.89 | 41.9 |
| CDX68329 | Canola | cytosol | 27.78 | 36.23 |
| CDY69110 | Canola | cytosol | 17.78 | 34.04 |
| CDY49631 | Canola | extracellular | 22.22 | 33.33 |
| CDY40545 | Canola | endoplasmic reticulum, extracellular | 36.67 | 33.33 |
| CDY01706 | Canola | golgi, mitochondrion, plasma membrane, plastid | 40.56 | 30.93 |
| CDX82807 | Canola | cytosol | 38.33 | 21.84 |
| CDY21329 | Canola | mitochondrion | 38.89 | 20.77 |
| CDY62002 | Canola | mitochondrion | 38.89 | 20.77 |
| CDX76421 | Canola | cytosol | 36.67 | 20.06 |
| CDY39164 | Canola | cytosol, mitochondrion, nucleus | 37.78 | 20.0 |
| CDY46364 | Canola | cytosol, mitochondrion, nucleus | 37.78 | 19.71 |
| CDX94026 | Canola | cytosol, mitochondrion, nucleus | 35.56 | 18.93 |
| CDY58481 | Canola | cytosol, mitochondrion, nucleus | 35.0 | 18.64 |
| CDY65341 | Canola | plastid | 37.22 | 18.06 |
| CDY22145 | Canola | cytosol | 33.89 | 15.93 |
| CDY28007 | Canola | cytosol | 33.89 | 15.02 |
| CDY35974 | Canola | cytosol | 33.33 | 14.78 |
| CDX74022 | Canola | cytosol | 30.0 | 14.06 |
| CDY60369 | Canola | cytosol | 11.67 | 11.29 |
| CDX79040 | Canola | cytosol, mitochondrion, nucleus, plastid | 38.33 | 9.79 |
| CDY23476 | Canola | cytosol | 1.67 | 2.54 |
Protein Annotations
| EnsemblPlants:CDY17665 | EnsemblPlantsGene:GSBRNA2T00001883001 | Gene3D:2.60.40.150 | InterPro:C2_dom | InterPro:C2_domain_sf | InterPro:IPR000008 |
| InterPro:IPR035892 | PANTHER:PTHR23180 | PANTHER:PTHR23180:SF296 | PFAM:PF00168 | PFscan:PS50004 | ProteinID:CDY17665 |
| ProteinID:CDY17665.1 | SEG:seg | SMART:SM00239 | SUPFAM:SSF49562 | UniParc:UPI0001B642B6 | UniProt:A0A078FT03 |
| MapMan:11.1.2.1.2 | : | : | : | : | : |
Description
BnaA06g34840DBnaA06g34840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT03]
Coordinates
chrLK032076:+:479400..480336
Molecular Weight (calculated)
20103.3 Da
IEP (calculated)
6.910
GRAVY (calculated)
-0.340
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQRPLGLLT IHVKRGINLA IRDHRSSDPY VVITVADQTL KTRVVKKNCN PIWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANLD IQPYLESLKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD MILRLNNVEC GEIEVMLEWH EGAGCRGITS KGVGGGSSST
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD MILRLNNVEC GEIEVMLEWH EGAGCRGITS KGVGGGSSST
001: MDQKPLGLLT IHVKRGINLA IRDHRSSDPY IVLNVADQTL KTRVVKKNCN PVWNEEMTVA IKDPNVPIRL TVFDWDKFTG DDKMGDANID IQPYLEALKM
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD LILRLNNVEC GEIEIMLEWH EGAGCRGITS SSKGGGSSST
101: GMELLRLPNG CAIKRVQPSR HNCLSDESSI VWNNGKITQD LILRLNNVEC GEIEIMLEWH EGAGCRGITS SSKGGGSSST
Arabidopsis Description
CAR10Protein C2-DOMAIN ABA-RELATED 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.