Factsheet for GSMUA_Achr4P03900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22350_001	Banana	cytosol	78.25	77.78
Os06t0609450-01	Rice	cytosol	31.12	74.64
EER88634	Sorghum	cytosol	73.72	73.72
Zm00001d015804_P005	Maize	cytosol, mitochondrion	68.58	70.5
Os02t0198300-02	Rice	plasma membrane	66.77	69.06
TraesCS6B01G190600.1	Wheat	cytosol	67.37	69.04
HORVU6Hr1G032940.1	Barley	cytosol	66.77	68.42
TraesCS6A01G160700.1	Wheat	cytosol	66.47	68.11
KXG29722	Sorghum	cytosol	64.35	68.05
GSMUA_Achr9P12760_001	Banana	cytosol	64.95	65.35
TraesCS6D01G152000.1	Wheat	cytosol	67.07	65.1
GSMUA_Achr9P27900_001	Banana	cytosol	66.47	63.4
GSMUA_Achr7P20210_001	Banana	cytosol	42.9	63.11
GSMUA_Achr8P09660_001	Banana	cytosol, plastid	49.55	47.26
GSMUA_Achr5P16180_001	Banana	cytosol	51.06	46.05
Zm00001d036830_P005	Maize	plastid	73.72	41.43
GSMUA_Achr2P13810_001	Banana	cytosol, mitochondrion	20.54	41.21
GSMUA_Achr10P...	Banana	cytosol	19.94	40.74
GSMUA_Achr4P13040_001	Banana	cytosol	20.85	40.35
GSMUA_Achr8P15780_001	Banana	mitochondrion	19.94	40.0
GSMUA_Achr6P00230_001	Banana	cytosol, mitochondrion	19.94	40.0
GSMUA_Achr10P...	Banana	cytosol	19.64	39.39
GSMUA_Achr2P15950_001	Banana	cytosol	20.54	39.31
GSMUA_Achr9P25020_001	Banana	cytosol	19.34	38.79
GSMUA_Achr6P07630_001	Banana	cytosol	18.13	36.14
GSMUA_Achr1P08400_001	Banana	cytosol, plasma membrane	19.64	35.52
GSMUA_Achr2P05420_001	Banana	cytosol	13.9	30.46

Protein Annotations

Gene3D:2.60.40.150	MapMan:22.3.4.3	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0008150
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G03900_001	EnsemblPlants:GSMUA_Achr4P03900_001	EnsemblPlants:GSMUA_Achr4T03900_001
InterPro:IPR000008	InterPro:IPR001164	InterPro:IPR035892	InterPro:IPR038508	UniProt:M0SKV7	PFAM:PF00168
PFAM:PF01412	PRINTS:PR00405	PFscan:PS50004	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF245
SMART:SM00105	SMART:SM00239	SUPFAM:SSF49562	SUPFAM:SSF57863	UniParc:UPI000296D1FB	SEG:seg

Description

ADP-ribosylation factor GTPase-activating protein AGD12 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03900_001]

Coordinates

chr4:-:3178726..3185571

Molecular Weight (calculated)

36082.8 Da

IEP (calculated)

5.068

GRAVY (calculated)

-0.276

Length

331 amino acids

Sequence
(BLAST)

001: MSGHNYDHGK STSSKRQKLK ELLLKSDNRI CADCGAPDPK WASANIGVFI CLKCSGVHRN LGTHISKVLS VTLDEWSDVQ INSMIEVGGN SCANAIYEAF
101: LPEGYAKPNS DSNYEERANF IRSKYELQEF LKPSLRIVPS KNTSTTCGSG KDSDSVSGSA SVNKTSQAGM VEFIGILNVK VIKGTNLAVR DVRSSDPYVV
201: LTLGQQRAQT AVIKSDLNPV WNEELKLSVP QNYGALKVQV FDQDVLSSND IMGEADVNLQ PMITAATAFG DPDLLADMQI GKWLQSNDNA LIRDSTINII
301: DGKVKQEVSL KLQNVESGGI DLELEWIPLA Q

Best Arabidopsis Sequence Match ( AT4G21160.4 )
(BLAST)

001: MSYSGAGLGK PGSGKRRIRD LLTQSDNRVC ADCGAPDPKW ASANIGVFIC LKCCGVHRSL GSHISKVLSV TLDEWSDEEV DSMIEIGGNA SANSIYEAFI
101: PEGSSKPGPD ASHDQRMRFI RSKYEHQEFL KPSLRITSVR GSSTKTPAFL SSSLSKKIVD SFRTNSSSQQ PQLEGMVEFI GLLKVTIKKG TNMAIRDMMS
201: SDPYVVLTLG QQKAQSTVVK SNLNPVWNEE LMLSVPHNYG SVKLQVFDYD TFSADDIMGE AEIDIQPLIT SAMAFGDPEM FGDMQIGKWL KSHDNALIED
301: SIINIADGKV KQEVQIKLQN VESGELELEM EWLPLEQ

Arabidopsis Description

AGD12ZAC [Source:UniProtKB/TrEMBL;Acc:A0A178UUS8]
SUBAcon: [cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.