Factsheet for GSMUA_Achr5P02560_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P21300_001
GSMUA_Achr4P00500_001
GSMUA_Achr5P05900_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P04940_001
GSMUA_Achr7P12530_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P19630_001
GSMUA_Achr7P20990_001
GSMUA_Achr8P14440_001
GSMUA_Achr8P18250_001
GSMUA_Achr9P00810_001
GSMUA_Achr9P15630_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	GSMUA_Achr10P...	AT1G14920.1	21798944
AT1G30120.1	GSMUA_Achr1P21300_001	AT1G14920.1	21798944
AT1G30120.1	GSMUA_Achr8P18250_001	AT1G14920.1	21798944
AT1G30120.1	GSMUA_Achr8P14440_001	AT1G70340.1	21798944
AT1G30120.1	GSMUA_Achr9P00810_001	AT1G70340.1	21798944
AT1G30120.1	GSMUA_Achr5P05900_001	AT3G17860.1	21798944
AT1G30120.1	GSMUA_Achr7P12530_001	AT3G17860.1	21798944
AT1G30120.1	GSMUA_Achr9P15630_001	AT3G17860.1	21798944
AT1G30120.1	GSMUA_Achr7P04940_001	AT3G21140.1	21798944
AT1G30120.1	GSMUA_Achr7P19630_001	AT3G21140.1	21798944
AT1G30120.1	GSMUA_AchrUn_...	AT3G21140.1	21798944
AT1G30120.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G30120.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G30120.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G30120.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54115	Canola	mitochondrion, peroxisome, plastid	13.48	81.97
Zm00001d000227_P001	Maize	cytosol	70.08	81.5
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	67.39	81.43
Os03t0645100-01	Rice	plastid	71.43	81.04
CDX90227	Canola	cytosol, mitochondrion, peroxisome	38.01	75.81
GSMUA_Achr2P12960_001	Banana	vacuole	12.67	75.81
GSMUA_Achr4P31470_001	Banana	mitochondrion	51.75	73.56
VIT_10s0003g03770.t01	Wine grape	plastid	75.47	71.61
CDY54117	Canola	cytosol	22.37	71.55
Solyc04g008590.2.1	Tomato	plastid	78.44	71.32
Zm00001d033225_P002	Maize	plastid	72.78	70.5
Solyc08g016750.2.1	Tomato	plastid	77.36	70.34
EER93752	Sorghum	plastid	73.32	70.28
EES16391	Sorghum	plastid	75.47	70.18
TraesCS5A01G374500.1	Wheat	plastid	74.12	69.97
TraesCS5D01G384100.1	Wheat	golgi	74.12	69.97
KRH58644	Soybean	nucleus	76.28	69.88
TraesCS5B01G376400.1	Wheat	plastid	73.85	69.72
VIT_04s0043g00720.t01	Wine grape	plastid	76.01	69.63
Os12t0616900-01	Rice	plastid	73.32	69.57
PGSC0003DMT400019358	Potato	plastid	77.9	69.3
CDY63670	Canola	plastid	75.2	69.23
KRH05520	Soybean	plastid	75.2	69.23
AT2G34590.1	Thale cress	plastid	75.74	69.21
KRH15497	Soybean	plastid	75.2	68.89
KRH42550	Soybean	plastid	74.39	67.98
Bra010796.1-P	Field mustard	plastid	73.58	67.74
AT1G30120.1	Thale cress	plastid	73.32	67.0
CDY51472	Canola	plastid	64.15	65.21
HORVU0Hr1G009910.2	Barley	plastid	69.0	64.97
TraesCS5A01G030800.1	Wheat	plastid	68.46	64.96
TraesCS5B01G030400.1	Wheat	plastid	68.73	64.89
PGSC0003DMT400080554	Potato	plastid	74.39	63.3
TraesCS5D01G039000.1	Wheat	plastid	68.46	62.72
HORVU5Hr1G092920.4	Barley	plastid	73.85	58.92
CDY26291	Canola	plastid	49.33	58.1
CDX90228	Canola	plastid	16.17	45.11
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	34.5	30.92
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	17.52	29.95
GSMUA_Achr8P20340_001	Banana	mitochondrion	27.49	27.2
CDY54116	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	EnsemblPlantsGene:GSMUA_Achr5G02560_001	EnsemblPlants:GSMUA_Achr5P02560_001	EnsemblPlants:GSMUA_Achr5T02560_001	InterPro:IPR009014	UniProt:M0SV35
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0002964B12
SEG:seg	:	:	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit beta [Source:GMGC_GENE;Acc:GSMUA_Achr5G02560_001]

Coordinates

chr5:+:1627626..1631616

Molecular Weight (calculated)

40360.8 Da

IEP (calculated)

6.174

GRAVY (calculated)

0.003

Length

371 amino acids

Sequence
(BLAST)

001: MAAALQTAAL LSASPNLIDP QRFRVGLLAR SLIGRRGSIF VVRSDGRTSG FFNAKSRSGN FITNAVATKA DASTSSTASK PGHELLLFEA LREGLEEEMD
101: RDPHVCVMGE DVGHYGGSYK VTKGLATKYG DLRVLDTPIA ENSFTGMGIG AAMTGLRPIV EGMNMGFLLL AYNQISNNCG MLHYTSGGQF KIPIVIRGPG
201: GVGRQLGAEH SQRLESYFQS IPGLQMVACS TPYNAKGLMK AAIRSENPVV LFEHVLLYNL KERIPDEEYV LCLEEAEMVI DIRSLKPFDL YTIGNSVKKT
301: HRVLIVEECM RTGGIGSSLR AAIIDNFWDY LDAPIMCLSS QDVPTPYAGT LEEWTVVQPA QIVAAVEQLC Q

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.