CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, mitochondrion

Predictor Summary:

mitochondrion 3
plastid 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	mitochondrion, peroxisome
BaCelLo:	mitochondrion
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82215
CDX92171
CDX95810
CDY11726
CDY19583
CDY24170
CDY27539
CDY32407
CDY36943
CDY37313
CDY50076

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	CDX92171	AT3G17860.1	21798944
AT1G30120.1	CDX95810	AT3G17860.1	21798944
AT1G30120.1	CDX82215	AT3G21140.1	21798944
AT1G30120.1	CDY11726	AT3G21140.1	21798944
AT1G30120.1	CDY19583	AT3G21140.1	21798944
AT1G30120.1	CDY27539	AT3G21140.1	21798944
AT1G30120.1	CDY32407	AT3G21140.1	21798944
AT1G30120.1	CDY37313	AT3G21140.1	21798944
AT1G30120.1	CDY50076	AT3G21140.1	21798944
AT1G30120.1	CDY24170	AT3G47620.1	21798944
AT1G30120.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000227_P001	Maize	cytosol	93.01	54.23
CDY26291	Canola	plastid	88.17	52.06
Os03t0645100-01	Rice	plastid	90.86	51.68
CDY51472	Canola	plastid	99.46	50.68
CDY54116	Canola	cytosol	10.22	47.5
Bra010796.1-P	Field mustard	plastid	99.46	45.91
CDY63670	Canola	plastid	99.46	45.91
VIT_10s0003g03770.t01	Wine grape	plastid	95.7	45.52
AT1G30120.1	Thale cress	plastid	97.85	44.83
Zm00001d033225_P002	Maize	plastid	91.4	44.39
CDY54115	Canola	mitochondrion, peroxisome, plastid	14.52	44.26
Os12t0616900-01	Rice	plastid	92.47	43.99
EER93752	Sorghum	plastid	91.4	43.93
KRH05520	Soybean	plastid	95.16	43.92
KRH58644	Soybean	nucleus	94.62	43.46
KRH15497	Soybean	plastid	94.62	43.46
KRH42550	Soybean	plastid	94.62	43.35
TraesCS5D01G384100.1	Wheat	golgi	91.4	43.26
TraesCS5B01G376400.1	Wheat	plastid	91.4	43.26
TraesCS5A01G374500.1	Wheat	plastid	91.4	43.26
Solyc04g008590.2.1	Tomato	plastid	94.62	43.14
EES16391	Sorghum	plastid	92.47	43.11
Solyc08g016750.2.1	Tomato	plastid	94.09	42.89
TraesCS5A01G030800.1	Wheat	plastid	89.25	42.46
TraesCS5B01G030400.1	Wheat	plastid	89.25	42.24
PGSC0003DMT400019358	Potato	plastid	94.62	42.21
HORVU0Hr1G009910.2	Barley	plastid	89.25	42.13
TraesCS5D01G039000.1	Wheat	plastid	89.25	40.99
PGSC0003DMT400080554	Potato	plastid	95.16	40.6
GSMUA_Achr5P02560_001	Banana	plastid	75.81	38.01
GSMUA_Achr2P12960_001	Banana	vacuole	12.37	37.1
HORVU5Hr1G092920.4	Barley	plastid	91.4	36.56
GSMUA_Achr4P31470_001	Banana	mitochondrion	44.62	31.8
CDY54117	Canola	cytosol	18.28	29.31
CDY45814	Canola	mitochondrion	40.32	20.44
CDY05827	Canola	mitochondrion	39.78	20.33
CDX71636	Canola	mitochondrion	39.78	20.33
CDX91560	Canola	mitochondrion	39.78	20.22
CDY16348	Canola	mitochondrion	39.78	20.22
CDX84881	Canola	mitochondrion	39.78	20.16
CDY10556	Canola	mitochondrion	30.65	15.75
CDY02436	Canola	mitochondrion	31.18	14.8
CDX90228	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:35.1	GO:A0A078DMK6	EnsemblPlants:CDX90227	ProteinID:CDX90227
ProteinID:CDX90227.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00150790001
InterPro:IPR009014	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0004EEF856
SEG:seg	:	:	:	:	:

Description

BnaA08g17570D

Coordinates

chrLK031862:-:753937..754824

Molecular Weight (calculated)

20936.4 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.202

Length

186 amino acids

Sequence
(BLAST)

001: MLHYTSGGQF TIPVVIRGPG GVGRQLGAEH SQRLESYFQS IPGIQMVACS TPYNAKGLMK AAIRSENPVI LFEHVLLYNL KEKIPDEEYI CNLEEAEMVR
101: PGEHITILTY SRMRYHVMQA AKTLVNKGYD PEVIDIRSLK PFDLYTIGNS VKKTHRDVPT PYAGTLEEWT VVQPAQIVTA VEQLCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.