CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82215
CDX92171
CDX95810
CDY11726
CDY19583
CDY24170
CDY27539
CDY32407
CDY36943
CDY37313
CDY50076

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	CDX92171	AT3G17860.1	21798944
AT1G30120.1	CDX95810	AT3G17860.1	21798944
AT1G30120.1	CDX82215	AT3G21140.1	21798944
AT1G30120.1	CDY11726	AT3G21140.1	21798944
AT1G30120.1	CDY19583	AT3G21140.1	21798944
AT1G30120.1	CDY27539	AT3G21140.1	21798944
AT1G30120.1	CDY32407	AT3G21140.1	21798944
AT1G30120.1	CDY37313	AT3G21140.1	21798944
AT1G30120.1	CDY50076	AT3G21140.1	21798944
AT1G30120.1	CDY24170	AT3G47620.1	21798944
AT1G30120.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	52.06	88.17
CDY54117	Canola	cytosol	25.08	68.1
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	64.44	66.12
CDY51472	Canola	plastid	70.79	61.1
Zm00001d000227_P001	Maize	cytosol	61.59	60.81
Os03t0645100-01	Rice	plastid	61.59	59.33
CDY63670	Canola	plastid	72.7	56.82
VIT_10s0003g03770.t01	Wine grape	plastid	68.57	55.24
AT1G30120.1	Thale cress	plastid	70.79	54.93
KRH05520	Soybean	plastid	69.84	54.59
Zm00001d033225_P002	Maize	plastid	66.35	54.57
EER93752	Sorghum	plastid	66.03	53.75
KRH58644	Soybean	nucleus	68.89	53.58
KRH15497	Soybean	plastid	68.89	53.58
KRH42550	Soybean	plastid	68.89	53.45
TraesCS5A01G374500.1	Wheat	plastid	66.67	53.44
TraesCS5D01G384100.1	Wheat	golgi	66.67	53.44
TraesCS5B01G376400.1	Wheat	plastid	66.67	53.44
Solyc04g008590.2.1	Tomato	plastid	68.89	53.19
EES16391	Sorghum	plastid	67.3	53.13
Solyc08g016750.2.1	Tomato	plastid	68.57	52.94
PGSC0003DMT400019358	Potato	plastid	68.57	51.8
Os12t0616900-01	Rice	plastid	63.81	51.41
TraesCS5B01G030400.1	Wheat	plastid	63.49	50.89
HORVU0Hr1G009910.2	Barley	plastid	63.49	50.76
TraesCS5A01G030800.1	Wheat	plastid	62.22	50.13
GSMUA_Achr5P02560_001	Banana	plastid	58.1	49.33
TraesCS5D01G039000.1	Wheat	plastid	62.86	48.89
PGSC0003DMT400080554	Potato	plastid	67.62	48.85
CDY54116	Canola	cytosol	6.03	47.5
CDX90228	Canola	plastid	19.37	45.86
HORVU5Hr1G092920.4	Barley	plastid	65.71	44.52
CDY54115	Canola	mitochondrion, peroxisome, plastid	8.57	44.26
GSMUA_Achr4P31470_001	Banana	mitochondrion	32.7	39.46
GSMUA_Achr2P12960_001	Banana	vacuole	7.3	37.1
CDY45814	Canola	mitochondrion	32.06	27.52
CDX71636	Canola	mitochondrion	31.75	27.47
CDY16348	Canola	mitochondrion	31.75	27.32
CDX84881	Canola	mitochondrion	31.75	27.25
CDY05827	Canola	mitochondrion	31.43	27.2
CDX91560	Canola	mitochondrion	31.43	27.05
CDY10556	Canola	mitochondrion	22.86	19.89
CDY02436	Canola	mitochondrion	23.81	19.13

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:35.1	GO:A0A078GLR5	UniProt:A0A078GLR5	EnsemblPlants:CDY26291
ProteinID:CDY26291	ProteinID:CDY26291.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
EnsemblPlantsGene:GSBRNA2T00034979001	InterPro:IPR009014	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF95
SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_C	UniParc:UPI0004EDF088	SEG:seg	:	:	:

Description

BnaA09g26420DPyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078GLR5]

Coordinates

chrLK032187:+:209611..211847

Molecular Weight (calculated)

34720.6 Da

IEP (calculated)

7.169

GRAVY (calculated)

-0.257

Length

315 amino acids

Sequence
(BLAST)

001: MSAIIHGAGA ATALTTFHSK KLVARSRTNL PGRSKRCIVA SGSDDGSKSF GSSSSLSLRH SHKLIPNNAV ATKVDTSATT GHELLLFEAL QEGLEEEMDR
101: DPHVCVMGED VGHYGGSYKV TKGLADKFGD LRPSTKSPTT VECFTTHLVV MGRQLGAEHS QRLESYFQSI PGIQMVACST PYNAKGLMKA AIRSENPVIL
201: FEHVLLYNLK EKIPDEEYIC NLEEAEMVRP GEHITILTYS RMRYHVMQAA KILVNKGYDP EVIDIRSLKP FDLYTIGNSV KKTHRDVPTP YAGTLEEWTV
301: VQPAQIVTAV EQLCQ

Best Arabidopsis Sequence Match ( AT2G34590.1 )
(BLAST)

001: MSAILQGAGA ATALSPFNSI DSNKLVAPSR SSLSVRSKRY IVAGSDSKSF GSSLVARRSE PLIPNAVTTK ADTAASSTSS KPGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKESIPDEEY ICNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLYTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

E1-BETA-2Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64688]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.