Factsheet for Zm00001d000227_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005726_P001
Zm00001d013465_P001
Zm00001d018045_P001
Zm00001d020409_P002
Zm00001d032009_P001
Zm00001d033680_P001
Zm00001d037221_P001
Zm00001d037710_P001
Zm00001d040147_P001
Zm00001d044836_P001
Zm00001d050365_P006
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30120.1	Zm00001d013465_P001	AT1G14920.1	21798944
AT1G30120.1	Zm00001d033680_P001	AT1G14920.1	21798944
AT1G30120.1	Zm00001d040147_P001	AT1G70340.1	21798944
AT1G30120.1	Zm00001d005726_P001	AT3G17860.1	21798944
AT1G30120.1	Zm00001d020409_P002	AT3G17860.1	21798944
AT1G30120.1	Zm00001d032009_P001	AT3G17860.1	21798944
AT1G30120.1	Zm00001d050365_P006	AT3G17860.1	21798944
AT1G30120.1	Zm00001d037710_P001	AT3G21140.1	21798944
AT1G30120.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G30120.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G30120.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G30120.1	Zm00001d052256_P001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90227	Canola	cytosol, mitochondrion, peroxisome	54.23	93.01
Bra032361.1-P	Field mustard	cytosol, mitochondrion, peroxisome	86.83	90.23
Zm00001d033225_P002	Maize	plastid	95.92	79.9
Os12t0616900-01	Rice	plastid	97.81	79.8
EES16391	Sorghum	plastid	99.37	79.45
TraesCS5B01G030400.1	Wheat	plastid	93.1	75.57
TraesCS5A01G030800.1	Wheat	plastid	92.48	75.45
CDY54115	Canola	mitochondrion, peroxisome, plastid	14.42	75.41
HORVU0Hr1G009910.2	Barley	plastid	92.79	75.13
TraesCS5D01G039000.1	Wheat	plastid	93.1	73.33
VIT_10s0003g03770.t01	Wine grape	plastid	89.34	72.89
GSMUA_Achr2P12960_001	Banana	vacuole	14.11	72.58
KRH58644	Soybean	nucleus	90.28	71.11
Bra010796.1-P	Field mustard	plastid	89.66	70.97
KRH05520	Soybean	plastid	89.66	70.97
KRH42550	Soybean	plastid	90.28	70.94
KRH15497	Soybean	plastid	89.97	70.86
CDY63670	Canola	plastid	89.34	70.72
GSMUA_Achr4P31470_001	Banana	mitochondrion	57.68	70.5
VIT_04s0043g00720.t01	Wine grape	plastid	89.34	70.37
AT1G30120.1	Thale cress	plastid	89.34	70.2
AT2G34590.1	Thale cress	plastid	89.34	70.2
Solyc04g008590.2.1	Tomato	plastid	89.66	70.1
GSMUA_Achr5P02560_001	Banana	plastid	81.5	70.08
Solyc08g016750.2.1	Tomato	plastid	89.03	69.61
CDY51472	Canola	plastid	79.31	69.32
PGSC0003DMT400019358	Potato	plastid	89.34	68.35
PGSC0003DMT400080554	Potato	plastid	89.66	65.6
CDY54117	Canola	cytosol	22.88	62.93
CDY26291	Canola	plastid	60.81	61.59
CDY54116	Canola	cytosol	5.64	45.0
Zm00001d006107_P001	Maize	mitochondrion	42.01	35.83
Zm00001d031659_P001	Maize	mitochondrion	43.26	34.76
Zm00001d021070_P002	Maize	mitochondrion	42.32	32.85
CDX90228	Canola	plastid	12.23	29.32
Zm00001d007892_P001	Maize	mitochondrion	31.97	28.1

Protein Annotations

Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:5.1.2.2.1.2	UniProt:B7ZWU6	EMBL:BT053788	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR11624	PANTHER:PTHR11624:SF93	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI00019171B4	EnsemblPlantsGene:Zm00001d000227	EnsemblPlants:Zm00001d000227_P001
EnsemblPlants:Zm00001d000227_T001	SEG:seg	:	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit beta

Coordinates

chrB73V4_ctg98:-:2666..3625

Molecular Weight (calculated)

35129.8 Da

IEP (calculated)

5.204

GRAVY (calculated)

0.019

Length

319 amino acids

Sequence
(BLAST)

001: MFEALREALI EEMNLDPTVC VMGEDVGHYG GSYKVTKGLA EMFGDLRVLD TPIAENSFTG MGVGAAMKGL RPVVEGMNMG FLLLAYNQIS NNCGMLHYTS
101: GGQFKIPVVI RGPGGVGRQL GAEHSQRLES YFQSIPGLQM VACSTPYNAK GLMKAAIRSE NPVVLFEHVL LYNLKEKIPD EEYICCLEEA EMVRPGEHVT
201: ILTYSRMRYH VMQAAKTLVN KGYDPEVIDI RSLKPFDLHT IGNSIKKTHR VLIVEECMRT GGIGASLRSA IIDNFWDYLD APIMCLSSQD VPTPYAATLE
301: DATVVQPAQI VAAVEQICQ

Best Arabidopsis Sequence Match ( AT1G30120.1 )
(BLAST)

001: MSSIIHGAGA ATTTLSTFNS VDSKKLFVAP SRTNLSVRSQ RYIVAGSDAS KKSFGSGLRV RHSQKLIPNA VATKEADTSA STGHELLLFE ALQEGLEEEM
101: DRDPHVCVMG EDVGHYGGSY KVTKGLADKF GDLRVLDTPI CENAFTGMGI GAAMTGLRPV IEGMNMGFLL LAFNQISNNC GMLHYTSGGQ FTIPVVIRGP
201: GGVGRQLGAE HSQRLESYFQ SIPGIQMVAC STPYNAKGLM KAAIRSENPV ILFEHVLLYN LKEKIPDEDY VCNLEEAEMV RPGEHITILT YSRMRYHVMQ
301: AAKTLVNKGY DPEVIDIRSL KPFDLHTIGN SVKKTHRVLI VEECMRTGGI GASLTAAINE NFHDYLDAPV MCLSSQDVPT PYAGTLEEWT VVQPAQIVTA
401: VEQLCQ

Arabidopsis Description

PDH-E1 BETAPyruvate dehydrogenase E1 component subunit beta-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.