Factsheet for Zm00001d006107_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014514_P001
Zm00001d014833_P001
Zm00001d017985_P001
Zm00001d044748_P002
Zm00001d052289_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	Zm00001d014514_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d014833_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d017985_P001	AT1G59900.1	21798944
AT5G50850.1	Zm00001d044748_P002	AT1G59900.1	21798944
AT5G50850.1	Zm00001d052289_P001	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97019	Sorghum	mitochondrion	98.13	97.87
TraesCS5A01G291500.1	Wheat	golgi	93.58	93.09
TraesCS5B01G290600.1	Wheat	mitochondrion	93.32	92.82
TraesCS5D01G299000.1	Wheat	mitochondrion	93.05	92.55
Os09t0509200-01	Rice	mitochondrion	90.91	90.43
KRH16935	Soybean	mitochondrion	84.22	87.5
KRH73802	Soybean	mitochondrion	83.42	86.67
KRH14338	Soybean	mitochondrion	82.62	85.83
Zm00001d031659_P001	Maize	mitochondrion	90.37	85.14
VIT_01s0146g00310.t01	Wine grape	mitochondrion	82.62	84.2
VIT_17s0000g00690.t01	Wine grape	mitochondrion	80.21	83.8
PGSC0003DMT400011072	Potato	mitochondrion	82.35	83.47
Zm00001d021070_P002	Maize	mitochondrion	91.44	83.21
Solyc03g097680.2.1	Tomato	plastid	82.09	83.2
AT5G50850.1	Thale cress	mitochondrion	80.48	82.92
Solyc06g072580.2.1	Tomato	nucleus	80.75	82.29
CDY16348	Canola	mitochondrion	80.48	82.24
CDX71636	Canola	mitochondrion	79.95	82.14
CDY45814	Canola	mitochondrion	80.48	82.02
CDX84881	Canola	mitochondrion	80.48	82.02
CDX91560	Canola	mitochondrion	80.21	81.97
Bra026451.1-P	Field mustard	mitochondrion	75.4	81.74
Bra022757.1-P	Field mustard	mitochondrion	79.68	81.2
Bra022529.1-P	Field mustard	mitochondrion	79.41	81.15
CDY05827	Canola	mitochondrion	78.88	81.04
PGSC0003DMT400069263	Potato	mitochondrion	79.95	77.86
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	86.1	77.78
HORVU5Hr1G077200.2	Barley	mitochondrion, plastid	89.3	77.49
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	44.92	77.42
Bra035715.1-P	Field mustard	mitochondrion	76.74	63.36
Zm00001d000227_P001	Maize	cytosol	35.83	42.01
Zm00001d033225_P002	Maize	plastid	37.43	36.55
Zm00001d007892_P001	Maize	mitochondrion	30.21	31.13

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
EntrezGene:542483	EMBL:AF069909	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0005975	GO:GO:0006086	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016491	GO:GO:0019538	GO:GO:0034982	GO:GO:0055114	InterPro:IPR009014
ProteinID:ONM22799.1	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94
UniProt:Q9ZQY2	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI000009ECD1	EnsemblPlantsGene:Zm00001d006107	EnsemblPlants:Zm00001d006107_P001	EnsemblPlants:Zm00001d006107_T001

Description

pyruvate dehydrogenase3 pyruvate dehydrogenase3

Coordinates

chr2:+:198318592..198324907

Molecular Weight (calculated)

40030.2 Da

IEP (calculated)

5.492

GRAVY (calculated)

0.070

Length

374 amino acids

Sequence
(BLAST)

001: MLGAARRQLG SGPMLGQVLR RLRPAVAAEV ARGYSAAAKE MTVRDALNSA LDEEMSADPS VFLMGEEVGE YQGAYKISKG LLDRYGPDRV LDTPITEAGF
101: TGIGVGAAYH GLRPIIEFMT FNFSMQAIDH IINSAAKSNY MSAGQISVPI VFRGPNGAAA GVGAQHSQCY AAWFAHVPGL KVLTPYSSED ARGLLKAAIR
201: DPDPVIFLEN ELLYGESFPV SAEVLDSSFC LPIGKAKIER EGKDVTITAF SKMVGYALQA AEILSKEGIS AEVINLRSIR PLDRAAINAS VRKTNRLVTV
301: EEGFPQHGIG AEICMSVVEE SFAYLDAPVE RIAGADVPMP YAANLERMAV PQVDDIVRAA KRACYRAVPM AAAA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.