Factsheet for Os08t0536000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867
mitochondrion: 23356873
plasma membrane: 27800704

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 23356873 doi

S Huang, RP Jacoby, RN Shingaki-Wells, L Li, AH Millar

ARC Centre of Excellence in Plant Energy Biology and Centre for Comparative Analysis of Biomolecular Networks (CABiN), The University of Western Australia, Bayliss Building M316, 35 Stirling Highway, Crawley, WA, 6009, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0739600-01
Os02t0739700-01
Os06t0246500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50850.1	Os02t0739600-01	AT1G59900.1	21798944
AT5G50850.1	Os02t0739700-01	AT1G59900.1	21798944
AT5G50850.1	Os06t0246500-01	AT1G59900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G055090.3	Barley	mitochondrion	91.98	92.97
TraesCS7B01G161100.1	Wheat	mitochondrion	91.71	92.95
Os09t0509200-01	Rice	mitochondrion	93.32	92.82
TraesCS7A01G263300.1	Wheat	plastid	91.44	92.68
TraesCS7D01G263900.2	Wheat	mitochondrion	90.64	92.62
KXG25507	Sorghum	mitochondrion	91.44	91.44
KRH16935	Soybean	mitochondrion	84.76	88.06
KRH73802	Soybean	mitochondrion	84.49	87.78
KRH14338	Soybean	mitochondrion	83.69	86.94
Zm00001d031659_P001	Maize	mitochondrion	91.44	86.15
VIT_01s0146g00310.t01	Wine grape	mitochondrion	83.42	85.01
AT5G50850.1	Thale cress	mitochondrion	81.82	84.3
PGSC0003DMT400011072	Potato	mitochondrion	82.62	83.74
CDY16348	Canola	mitochondrion	81.82	83.61
CDX91560	Canola	mitochondrion	81.82	83.61
Bra026451.1-P	Field mustard	mitochondrion	77.01	83.48
Solyc03g097680.2.1	Tomato	plastid	82.35	83.47
CDY45814	Canola	mitochondrion	81.82	83.38
CDX84881	Canola	mitochondrion	81.82	83.38
CDX71636	Canola	mitochondrion	81.02	83.24
CDY05827	Canola	mitochondrion	80.75	82.97
Bra022757.1-P	Field mustard	mitochondrion	81.02	82.56
Bra022529.1-P	Field mustard	mitochondrion	80.75	82.51
Solyc06g072580.2.1	Tomato	nucleus	80.75	82.29
VIT_17s0000g00690.t01	Wine grape	mitochondrion	77.81	81.28
GSMUA_Achr8P09180_001	Banana	extracellular, mitochondrion, peroxisome	45.72	78.8
GSMUA_Achr5P25000_001	Banana	mitochondrion, plastid	86.63	78.26
PGSC0003DMT400069263	Potato	mitochondrion	80.21	78.12
Bra035715.1-P	Field mustard	mitochondrion	78.61	64.9
Os03t0645100-01	Rice	plastid	36.63	41.9
Os12t0616900-01	Rice	plastid	37.97	36.32
Os07t0170100-01	Rice	mitochondrion	32.09	32.43
Os09t0509300-01	Rice	plasma membrane	13.64	8.13

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	MapMan:2.2.1.1.2	Gene3D:3.40.50.920	Gene3D:3.40.50.970
EntrezGene:4346159	EMBL:AK104686	ProteinID:BAD01226.1	ProteinID:BAD13111.1	ProteinID:BAF24274.1	ProteinID:BAT06442.1
ProteinID:EEE69070.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0005975	GO:GO:0006086
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114	InterPro:IPR009014	EnsemblPlantsGene:Os08g0536000
EnsemblPlants:Os08t0536000-01	InterPro:PDHB	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94
UniProt:Q6Z1G7	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	UniParc:UPI0000212FA4	RefSeq:XP_015650909.1	SEG:seg	:

Description

Similar to Pyruvate dehydrogenase E1 beta subunit isoform 1 (EC 1.2.4.1). (Os08t0536000-01)

Coordinates

chr8:+:26777982..26783294

Molecular Weight (calculated)

39947.0 Da

IEP (calculated)

5.012

GRAVY (calculated)

0.060

Length

374 amino acids

Sequence
(BLAST)

001: MLGIARRRLG SGCALGQLMQ ALRPAAAAAA ARTYSAAAKE MTVREALNSA LDEEMSADPS VFLMGEEVGE YQGAYKISKG LLDKYGPDRV LDTPITEAGF
101: TGIGVGAAYQ GLRPVVEFMT FNFSMQAIDH IINSAAKSNY MSAGQINVPI VFRGPNGAAA GVGAQHSQCY AAWYAHVPGL KVLTPYSAED ARGLLKAAIR
201: DPDPVVFLEN ELLYGESFPV SAEVLDSSFC LPIGKAKIEQ EGKDVTITAF SKMVGYALQA AEILSKEGIS AEVINLRSIR PLDRATINAS VRKTNRLVTL
301: EEGFPQHGVG AEICMSVVED SFEYLDAPVE RIAGADVPMP YAANLERMAV PQVEDIVRAA KRACYRAVPM AATA

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.