CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96593	Canola	mitochondrion	95.56	95.97
CDY65512	Canola	mitochondrion	86.89	87.08
CDY50237	Canola	mitochondrion	86.89	87.08
Solyc06g059850.1.1	Tomato	cytosol	54.55	67.89
KRH64579	Soybean	endoplasmic reticulum	63.85	63.18
VIT_18s0001g14980.t01	Wine grape	plastid	62.79	63.06
KRH53343	Soybean	mitochondrion	64.48	62.63
CDX81122	Canola	plastid	61.52	62.31
CDX78354	Canola	plastid	61.95	62.08
PGSC0003DMT400033905	Potato	mitochondrion	58.56	60.75
PGSC0003DMT400063962	Potato	mitochondrion, plastid	60.47	60.72
Solyc06g059840.2.1	Tomato	mitochondrion	58.35	60.53
TraesCS4B01G071500.1	Wheat	mitochondrion	58.99	59.87
Solyc04g063350.2.1	Tomato	mitochondrion	59.62	59.75
TraesCS5B01G121400.3	Wheat	mitochondrion	59.2	59.7
GSMUA_Achr3P18980_001	Banana	mitochondrion	57.93	59.57
TraesCS5D01G126700.1	Wheat	mitochondrion	58.99	59.49
TraesCS5A01G120000.3	Wheat	mitochondrion	58.77	59.28
HORVU5Hr1G034820.3	Barley	mitochondrion	58.14	58.64
Os12t0183100-01	Rice	mitochondrion	60.04	58.44
AT5G34780.1	Thale cress	cytosol, mitochondrion	43.97	56.99
Zm00001d023694_P001	Maize	mitochondrion	58.77	56.97
PGSC0003DMT400012840	Potato	cytosol, mitochondrion, plasma membrane	32.56	56.41
Solyc12g055890.1.1	Tomato	mitochondrion	34.67	55.22
KXG23145	Sorghum	mitochondrion	58.35	54.55
Solyc12g055880.1.1	Tomato	cytosol	15.01	52.59
CDY31596	Canola	mitochondrion	4.65	32.84
CDY70124	Canola	cytosol	9.51	31.03
CDY55062	Canola	cytosol	10.15	25.53
CDY33613	Canola	mitochondrion	20.93	25.45
CDY38784	Canola	mitochondrion	20.93	25.26
CDY11622	Canola	mitochondrion	20.72	25.0
CDY24500	Canola	mitochondrion	20.51	24.94
CDY28458	Canola	mitochondrion	19.87	23.8
CDY40292	Canola	mitochondrion	19.66	23.54
CDY16236	Canola	mitochondrion	18.82	23.0
CDY37427	Canola	cytosol, mitochondrion, plastid	7.4	22.73
CDY37473	Canola	plastid	18.82	21.04
CDY32445	Canola	plastid	18.82	20.94
CDX90009	Canola	plastid	18.6	20.66
CDY15202	Canola	plastid	18.6	20.51
CDY37428	Canola	cytosol	6.34	20.41
CDY14675	Canola	cytosol	18.39	19.77
CDY55064	Canola	plasma membrane	12.47	17.99

Protein Annotations

EnsemblPlants:CDY65109	EnsemblPlantsGene:GSBRNA2T00044181001	Gene3D:3.40.50.970	GO:A0A078JEI9	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1	InterPro:THDP-binding
PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	PFAM:PF00676	ProteinID:CDY65109	ProteinID:CDY65109.1	SUPFAM:SSF52518
UniParc:UPI0004EDB220	UniProt:A0A078JEI9	MapMan:4.2.7.2.1.1	:	:	:

Description

BnaUnng01000DBnaUnng01000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEI9]

Coordinates

chrLK034660:-:1090..4668

Molecular Weight (calculated)

53448.2 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.459

Length

473 amino acids

Sequence
(BLAST)

001: MAIWFARSRN IVFSLRHNLN LPGILIKRDY SPRPAFTNSQ LSSKSSVFLD SFTSLRHEST AVEKQLDLVQ QSDEENPDQE LDFPGGKLGS TSKMKFIPES
101: SPLRVPCYRV LDEDGRIIPD SDYIPVSEKL AVRMYEHMAT LQVMDHIFYE AQRQGRISFF ITTVGEEAIN IASAAALSPE DVVLPQYREP GVLLWRGFTL
201: QEFANQCFGN KADHGKGRQM PVHYGSNRHN HFTVSSPIAT QLPQAAGVGY SLKMEKKNAC AVTFIGDGGT SEGDFHAGLN FAAVMEAPVV FICRNNGWAI
301: STHISEQFRS DGIVVKGRAY GIRSIRVDGN DALAVYSAVR SAREMAVKEQ RPVLIEAMTY RVGHHSTSDD STKYRAADEI QYWKMSRNPV NIFRKWVEDN
401: GWWSEEDESK IRSNARKQIL QAIQAAEKWD KQPLTELFSD VYDVKPKNLE EQELGLKELV EKQPQDYPPG FQI

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.