Factsheet for Solyc06g059840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 9
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033905	Potato	mitochondrion	91.89	91.89
Solyc06g059850.1.1	Tomato	cytosol	59.43	71.32
Solyc04g025710.1.1	Tomato	cytosol	14.91	62.96
Solyc04g063350.2.1	Tomato	mitochondrion	61.62	59.53
CDX96593	Canola	mitochondrion	61.4	59.45
Bra016423.1-P	Field mustard	mitochondrion	60.96	59.02
CDY65512	Canola	mitochondrion	60.53	58.47
CDY65109	Canola	mitochondrion	60.53	58.35
Bra017912.1-P	Field mustard	mitochondrion	60.31	58.26
CDY50237	Canola	mitochondrion	60.31	58.26
VIT_18s0001g14980.t01	Wine grape	plastid	60.09	58.17
TraesCS4B01G071500.1	Wheat	mitochondrion	58.55	57.3
Solyc12g055890.1.1	Tomato	mitochondrion	37.28	57.24
TraesCS5B01G121400.3	Wheat	mitochondrion	58.77	57.14
TraesCS5D01G126700.1	Wheat	mitochondrion	58.77	57.14
TraesCS5A01G120000.3	Wheat	mitochondrion	58.55	56.93
KRH64579	Soybean	endoplasmic reticulum	59.21	56.49
Solyc12g055880.1.1	Tomato	cytosol	16.67	56.3
HORVU5Hr1G034820.3	Barley	mitochondrion	57.68	56.08
KRH53343	Soybean	mitochondrion	59.65	55.85
Zm00001d023694_P001	Maize	mitochondrion	59.21	55.33
Solyc05g056480.2.1	Tomato	plastid	56.36	55.03
Os12t0183100-01	Rice	mitochondrion	58.55	54.94
GSMUA_Achr3P18980_001	Banana	mitochondrion	55.26	54.78
KXG23145	Sorghum	mitochondrion	59.65	53.75
AT1G21400.5	Thale cress	plastid	60.09	52.29
AT5G34780.1	Thale cress	cytosol, mitochondrion	30.92	38.63
Solyc05g006520.2.1	Tomato	plastid	22.15	25.83
Solyc04g005080.2.1	Tomato	mitochondrion, unclear	20.61	24.04
Solyc07g042920.1.1	Tomato	cytosol, mitochondrion, plastid	13.6	21.75
Solyc12g009400.1.1	Tomato	plastid	20.18	20.91
Solyc12g009410.1.1	Tomato	plastid	20.18	20.91

Protein Annotations

EnsemblPlants:Solyc06g059840.2.1	EnsemblPlantsGene:Solyc06g059840.2	Gene3D:3.40.50.970	GO:GO:0003674	GO:GO:0003824	GO:GO:0003863
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016624	GO:GO:0055114	InterPro:DH_E1
InterPro:THDP-binding	PANTHER:PTHR43380	PANTHER:PTHR43380:SF2	PFAM:PF00676	SUPFAM:SSF52518	UniParc:UPI0002765D85
UniProt:K4C6H0	MapMan:4.2.7.2.1.1	:	:	:	:

Description

No Description!

Coordinates

chr6:-:37729682..37733959

Molecular Weight (calculated)

51354.8 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.432

Length

456 amino acids

Sequence
(BLAST)

001: MATWFLRRLN NHGVMQKLSM AFSGKSTTAI GRRYFVSMEV GQKLDPYSCD DDYRENIDHQ NQDLDFPGGK IPLTSQMKFI SEASEKRLPC YRVLNDDGSL
101: ISNSIHDQLG EEVAVNMYSA MVTLKTMDTY LYEAQRQGRI SFYMTTFGEE AINIASAAAL SPHDFVLPQY REAGVLLWRG FTVQECTNQC FGNKDDKGKG
201: RQMPVHYGSN KHNVITISSP LATQISQAAG VAYSLKMDKT GACAVAYTGE GATSEGDFHA GLNFAAVLEA PVIFLCRNNG WAISTPVHEQ FRSDGIVSKG
301: LGYGIRSIRV DGNDVIAVYN AVRAARTMAI SEERPILVEA MTYRVGHHST SDDSTKYRPT NEIEYWKTAR CPINLFRKHI QRNGWWSDVQ ESELYTHVKN
401: QVLEAIKTAE GMEKPALTEL FSDVYEKMTP NLQEQERCIR DAIHKYPKDY PTDFQV

Best Arabidopsis Sequence Match ( AT1G21400.1 )
(BLAST)

001: MAIWFARSKT LVSSLRHNLN LSTILIKRDY SHRPIFYTTS QLSSTAYLSP FGSLRHESTA VETQADHLVQ QIDEVDAQEL DFPGGKVGYT SEMKFIPESS
101: SRRIPCYRVL DEDGRIIPDS DFIPVSEKLA VRMYEQMATL QVMDHIFYEA QRQGRISFYL TSVGEEAINI ASAAALSPDD VVLPQYREPG VLLWRGFTLE
201: EFANQCFGNK ADYGKGRQMP IHYGSNRLNY FTISSPIATQ LPQAAGVGYS LKMDKKNACT VTFIGDGGTS EGDFHAGLNF AAVMEAPVVF ICRNNGWAIS
301: THISEQFRSD GIVVKGQAYG IRSIRVDGND ALAVYSAVRS AREMAVTEQR PVLIEMMTYR VGHHSTSDDS TKYRAADEIQ YWKMSRNPVN RFRKWVEDNG
401: WWSEEDESKL RSNARKQLLQ AIQAAEKWEK QPLTELFNDV YDVKPKNLEE QELGLKELVK KQPQDYPPGF HV

Arabidopsis Description

Thiamin diphosphate-binding fold (THDP-binding) superfamily protein [Source:TAIR;Acc:AT1G21400]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.