Factsheet for VIT_04s0008g02300.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0146g00310.t01	Wine grape	mitochondrion	57.58	20.71
VIT_17s0000g00690.t01	Wine grape	mitochondrion	54.55	20.11
VIT_10s0003g03770.t01	Wine grape	plastid	28.03	9.46
VIT_04s0043g00720.t01	Wine grape	plastid	28.03	9.14
VIT_06s0004g00190.t01	Wine grape	mitochondrion	24.24	8.94

Protein Annotations

KEGG:00010+1.2.4.1	KEGG:00020+1.2.4.1	KEGG:00620+1.2.4.1	Gene3D:3.40.50.970	MapMan:35.1	ProteinID:CCB46633
ProteinID:CCB46633.1	UniProt:F6H2U8	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0004739
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0005975	GO:GO:0006086	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016491	GO:GO:0055114
InterPro:PDHB	PANTHER:PTHR11624	PANTHER:PTHR11624:SF94	SUPFAM:SSF52518	InterPro:THDP-binding	UniParc:UPI0002109D65
ArrayExpress:VIT_04s0008g02300	EnsemblPlantsGene:VIT_04s0008g02300	EnsemblPlants:VIT_04s0008g02300.t01	:	:	:

Description

Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:F6H2U8]

Coordinates

chr4:+:1897381..1899020

Molecular Weight (calculated)

14642.8 Da

IEP (calculated)

6.510

GRAVY (calculated)

0.219

Length

132 amino acids

Sequence
(BLAST)

001: MLWVKRLGNT KVHTRFLTGF LEKYNPEKVL DTPITEAGFT GIGVGAQHSQ CNITGYGSYS GLKALSPYSS EDAHGLLKVV MRDLDPVVFL ENELLYGESF
101: LVSAKALDSS KLSTYINISL ELLLHIIVIY FI

Best Arabidopsis Sequence Match ( AT5G50850.1 )
(BLAST)

001: MLGILRQRAI DGASTLRRTR FALVSARSYA AGAKEMTVRD ALNSAIDEEM SADPKVFVMG EEVGQYQGAY KITKGLLEKY GPERVYDTPI TEAGFTGIGV
101: GAAYAGLKPV VEFMTFNFSM QAIDHIINSA AKSNYMSAGQ INVPIVFRGP NGAAAGVGAQ HSQCYAAWYA SVPGLKVLAP YSAEDARGLL KAAIRDPDPV
201: VFLENELLYG ESFPISEEAL DSSFCLPIGK AKIEREGKDV TIVTFSKMVG FALKAAEKLA EEGISAEVIN LRSIRPLDRA TINASVRKTS RLVTVEEGFP
301: QHGVCAEICA SVVEESFSYL DAPVERIAGA DVPMPYAANL ERLALPQIED IVRASKRACY RSK

Arabidopsis Description

PDH2Pyruvate dehydrogenase E1 component subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178UM82]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.