CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	92.93	96.21
Bra020013.1-P	Field mustard	cytosol	95.84	95.21
AT1G09570.3	Thale cress	cytosol	89.1	95.12
CDY22632	Canola	cytosol, plastid	87.27	93.41
CDY06362	Canola	cytosol, plastid	86.94	93.22
VIT_14s0060g00100.t01	Wine grape	nucleus	76.37	81.67
Solyc10g044670.1.1	Tomato	extracellular	74.04	79.25
PGSC0003DMT400040772	Potato	cytosol	73.96	79.16
KRG90417	Soybean	nucleus	73.54	78.72
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	73.63	74.31
KRG96653	Soybean	nucleus	69.63	74.07
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	61.23	68.47
HORVU0Hr1G023250.4	Barley	cytosol	19.38	66.95
HORVU1Hr1G068750.7	Barley	cytosol	19.55	66.2
TraesCS4B01G052000.1	Wheat	mitochondrion	48.59	65.99
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	53.24	65.71
GSMUA_Achr5P27310_001	Banana	cytosol	8.4	65.16
OQU91090	Sorghum	nucleus	59.65	63.4
Os03t0719800-01	Rice	plastid	59.23	63.12
Zm00001d013402_P005	Maize	nucleus	59.32	63.04
Zm00001d033799_P001	Maize	cytosol	59.23	62.95
HORVU4Hr1G008610.2	Barley	mitochondrion	58.24	61.95
TraesCS4A01G262900.1	Wheat	mitochondrion	57.82	61.5
TraesCS4D01G052200.1	Wheat	plastid	57.9	61.38
Zm00001d008542_P001	Maize	cytosol	12.31	61.16
OQU91089	Sorghum	cytosol	8.4	56.42
CDY38546	Canola	cytosol, plastid	47.92	51.57
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	47.92	51.52
CDX92112	Canola	cytosol	48.09	50.97
CDX75900	Canola	cytosol	47.92	49.87
CDX95888	Canola	cytosol	47.67	49.06
CDX78827	Canola	cytosol	42.26	47.04
CDY61670	Canola	cytosol	43.34	46.68
CDX82382	Canola	cytosol	5.24	34.24
CDY42549	Canola	cytosol	5.49	29.2

Protein Annotations

Gene3D:1.10.287.130	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10
GO:A0A078DW21	EnsemblPlants:CDX93501	ProteinID:CDX93501	ProteinID:CDX93501.1	ncoils:Coil	InterPro:GAF
InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009605	GO:GO:0009628
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0018298	GO:GO:0019538	GO:GO:0038023
EnsemblPlantsGene:GSBRNA2T00156170001	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014
InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	InterPro:PAS	InterPro:PAS-like_dom_sf
InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518
PFAM:PF08446	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112
PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_cen-reg
SMART:SM00065	SMART:SM00091	SMART:SM00387	SMART:SM00388	SUPFAM:SSF55781	SUPFAM:SSF55785
SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI0004EF2DFF	SEG:seg	:	:

Description

BnaA06g05470D

Coordinates

chrLK031876:+:443417..449729

Molecular Weight (calculated)

133331.0 Da

IEP (calculated)

6.754

GRAVY (calculated)

-0.124

Length

1202 amino acids

Sequence
(BLAST)

0001: MSMNYFKIIK KPLKSVTRQD LIIVSFKLLL KCAQPATGTH TPLTKFLLAV TIYKKKHPIN RLLLALFSER QIGSDPGENM SGSRPSHSSE GSRRSRHSAR
0101: IIAQTTVDAK LHADFEESGS SFDYSTSVRV TGPVVENQPP RSDKVTTTYL HHIQKGKLIQ PFGCLLALDE KTFKVIAYSE NAAELLTMAS HAVPSVGEQG
0201: ALGIGTDIRS LFTAPSASAL QKALGFGDVS LLNPILVHCK TSAKPFYAIV HRVTGSIIVD FEPVKPYEVP MTAAGALQSY KLAAKAITRL QSLPSGSMER
0301: LCDTMVQEVF ELTGYDRVMA YKFHDDDHGE VVSEVTKPGL EPYLGLHYPA TDIPQAARFL FMKNKVRMIV DCNAKHVRVL QDEKLSSDLT LCGSTLRAPH
0401: SCHLQYMANM DSIASLVMAV VVNEEDGEGD TAAPDSTAPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK EVELENQIVE KNILRTQTLL
0501: CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKVWKLG ITPSEFHLQE IASWLCEYHT DSTGLSTDSL HDAGFPRALA LGDSVCGMAA VRISSKDMIF
0601: WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDG ETTDVNTKII HSKLNDLKID GIQELEAVTS
0701: EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLPVDEA IGKHLLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH LSRADAGPIS LVVNACASRD
0801: LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVMDKMLLG EVFGTQKSCC RLKNQEAFVN
0901: LGIVLNNAVT SQEAEKVPFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTALKRLKAL AYIKRQIRNP LSGIMFTRKM
1001: MEVSELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFSL NEVLTASTSQ VMMKSNGKSV RITNDTGEEV MSDTLYGDSI RLQQVLADFM
1101: LMSVNFTPSG GELTVTASLR KDQLGRSVHL AYLEIRITHT GAGLPEFLLN QMFGTEEDMS EEGLSLMVSR KLVKLMNGDV QYLRQAGKSS FIITAELAAA
1201: NK

Best Arabidopsis Sequence Match ( AT1G09570.4 )
(BLAST)

0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.