Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38546 | Canola | cytosol, plastid | 97.23 | 97.31 |
| AT5G35840.1 | Thale cress | mitochondrion | 86.94 | 87.49 |
| GSMUA_Achr4P32940_001 | Banana | cytosol | 7.25 | 69.83 |
| VIT_12s0057g00980.t01 | Wine grape | cytosol, plastid | 63.86 | 63.86 |
| PGSC0003DMT400044822 | Potato | plastid | 61.45 | 61.34 |
| Solyc07g045480.2.1 | Tomato | plastid | 60.73 | 60.73 |
| GSMUA_Achr6P00080_001 | Banana | mitochondrion | 52.24 | 58.23 |
| Zm00001d034038_P002 | Maize | peroxisome | 58.05 | 57.18 |
| EER93439 | Sorghum | plastid | 57.78 | 56.92 |
| TraesCS5D01G401000.1 | Wheat | cytosol, plastid | 57.42 | 56.37 |
| HORVU5Hr1G095530.2 | Barley | plastid | 57.25 | 55.8 |
| TraesCS5A01G391300.2 | Wheat | cytosol, plastid | 57.25 | 54.98 |
| TraesCS5B01G396200.1 | Wheat | plastid | 54.56 | 52.95 |
| CDY06362 | Canola | cytosol, plastid | 50.98 | 50.85 |
| CDY22632 | Canola | cytosol, plastid | 50.89 | 50.67 |
| GSMUA_Achr4P32930_001 | Banana | cytosol | 26.39 | 50.08 |
| CDX92112 | Canola | cytosol | 50.36 | 49.65 |
| CDY50896 | Canola | endoplasmic reticulum, plastid, vacuole | 51.52 | 49.61 |
| CDX95888 | Canola | cytosol | 50.45 | 48.29 |
| CDX93501 | Canola | cytosol | 51.52 | 47.92 |
| CDX75900 | Canola | cytosol | 49.46 | 47.88 |
| Zm00001d018728_P001 | Maize | cytosol, mitochondrion | 9.03 | 47.42 |
| Zm00001d013262_P001 | Maize | nucleus, plastid | 57.16 | 46.61 |
| CDY61670 | Canola | cytosol | 44.36 | 44.44 |
| CDX78827 | Canola | cytosol | 42.49 | 43.98 |
| Os03t0752100-01 | Rice | cytosol | 8.86 | 43.23 |
| Zm00001d006712_P001 | Maize | peroxisome | 6.53 | 41.71 |
| Zm00001d050162_P001 | Maize | cytosol | 5.01 | 40.58 |
| Zm00001d012117_P001 | Maize | cytosol | 5.19 | 39.73 |
| Zm00001d022520_P001 | Maize | cytosol | 5.19 | 39.73 |
| CDX82382 | Canola | cytosol | 6.17 | 37.5 |
| CDY42549 | Canola | cytosol | 5.81 | 28.76 |
Protein Annotations
| MapMan:26.1.1.1 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 | Gene3D:3.30.450.40 | Gene3D:3.30.565.10 | GO:A0A078EWL9 |
| EnsemblPlants:CDY06455 | ProteinID:CDY06455 | ProteinID:CDY06455.1 | InterPro:GAF | InterPro:GAF-like_dom_sf | GO:GO:0003674 |
| GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009584 |
| GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0017006 |
| GO:GO:0018298 | GO:GO:0019538 | GO:GO:0038023 | GO:GO:0042803 | EnsemblPlantsGene:GSBRNA2T00122506001 | InterPro:HATPase_C |
| InterPro:HATPase_C_sf | InterPro:His_kinase_dom | InterPro:IPR000014 | InterPro:IPR005467 | InterPro:IPR016132 | InterPro:IPR029016 |
| InterPro:IPR036890 | InterPro:PAS | InterPro:PAS-like_dom_sf | InterPro:PAS_2 | InterPro:PAS_fold | PFAM:PF00360 |
| PFAM:PF00989 | PFAM:PF01590 | PFAM:PF02518 | PFAM:PF08446 | PIRSF:PIRSF000084 | PRINTS:PR01033 |
| ScanProsite:PS00245 | PFscan:PS50046 | PFscan:PS50109 | PFscan:PS50112 | PANTHER:PTHR43719 | PANTHER:PTHR43719:SF4 |
| InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment | InterPro:Phytochrome | InterPro:Phytochrome_A-E | InterPro:Phytochrome_cen-reg | SMART:SM00065 |
| SMART:SM00091 | SMART:SM00387 | SUPFAM:SSF55781 | SUPFAM:SSF55785 | SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 |
| UniParc:UPI0004EEDE88 | SEG:seg | : | : | : | : |
Description
BnaC06g11890D
Coordinates
chrLK031970:-:205848..209600
Molecular Weight (calculated)
123960.0 Da
IEP (calculated)
5.760
GRAVY (calculated)
-0.122
Length
1118 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSGSNSGSC STRSRNNSRV TSQVLADAKL HGSFEESERL FDYSASINVN MPTSSSYDIP SSSDVSSYLQ KIQRGMLIQP FGCLIVVDDK TLKVIAFSEN
0101: TQEMLGLTPH TVPSITEQRE ALSIGTDVQS LFQSQGSSAL QKAADFGEIS ILNPITLHCR TSGKPFYAIL HRIEQGLVID LEPVSPDEVP VTAAGALKSY
0201: KLAAKSISRL QALPSGNMSL LCDALVKEVS ELTGYDRVMV YKFHEDGHGE VIAECCKADL EPYLGLHYSA TDIPQASRFL FMRNKVRMIC DCSAAPVKVV
0301: QDKSLSQPVT LSGSTLRAPH GCHAQYMSNM GSVASLVMSV TINGSDSDEM NRDLQTGRTL WGLVVCHHAS PRVVPFPLRY ACEFLTQVFG VQINKEAESA
0401: LLLKEKRILQ TQSVLCDMLF RNAPIGIVTQ SPNIMDLVKC DGAALYYRDK LWALGVTPTE TQIRDIIDWV LKSQGGGNSG FTTESLMESG YPDASVLGES
0501: ICGMAAVHIT QKVFLFWFRS GTAKQIKWGG ARHDPDDRDG KRMQHPRSSF KAFMEIVRWK SMPWDDMEMD AINSLQLIIK GSLQEEHPET VVDVPPFVDN
0601: RVQKVDEMCV IVNEMVRLID TAVVPIFAAD ASGVINGWNS KAAEVTGLAV EQAIGKPVSD IVEDDSAITV KNMLALALQG HEERGAEIRI RAFGPKRKSS
0701: PIELVVNTCC SRDTTNNVHG VCFIGQDVTG QKTLIEKYSR VQGDYARIMW SPSTLIPPIF MTTENGLCSE WNDAMQKLSG IRREEAVNKM LLGEVFTSND
0801: SCCRLQDHDT LTKLRIALNA VSSGQDNMEK LLFGFYHRDG RFIEALLSAN KRTDMEGKVT GVLCFVQVPS PELQYVLQVQ RISEQAMACA VNKMAYLRQQ
0901: VENPEKAISF LQDFLHSSGL NEEQKQLLST SVSCREQLAK VISDSDIEGI EDGYVQLGCS EFSLEESLEA VVKQVMELSI ERKVQIICDY PQEVSLMRLY
1001: GDSLRLQQIL SETLSSCIRF TPALKGLCVS FKVMSRIEAI GKRMKRVELE FRIIHPAPGL PDDLVREMFQ PLRKDTSREG LGLHITQKMV KLMEGGTLRY
1101: LRESEMSAFV ILAEFPLI
0101: TQEMLGLTPH TVPSITEQRE ALSIGTDVQS LFQSQGSSAL QKAADFGEIS ILNPITLHCR TSGKPFYAIL HRIEQGLVID LEPVSPDEVP VTAAGALKSY
0201: KLAAKSISRL QALPSGNMSL LCDALVKEVS ELTGYDRVMV YKFHEDGHGE VIAECCKADL EPYLGLHYSA TDIPQASRFL FMRNKVRMIC DCSAAPVKVV
0301: QDKSLSQPVT LSGSTLRAPH GCHAQYMSNM GSVASLVMSV TINGSDSDEM NRDLQTGRTL WGLVVCHHAS PRVVPFPLRY ACEFLTQVFG VQINKEAESA
0401: LLLKEKRILQ TQSVLCDMLF RNAPIGIVTQ SPNIMDLVKC DGAALYYRDK LWALGVTPTE TQIRDIIDWV LKSQGGGNSG FTTESLMESG YPDASVLGES
0501: ICGMAAVHIT QKVFLFWFRS GTAKQIKWGG ARHDPDDRDG KRMQHPRSSF KAFMEIVRWK SMPWDDMEMD AINSLQLIIK GSLQEEHPET VVDVPPFVDN
0601: RVQKVDEMCV IVNEMVRLID TAVVPIFAAD ASGVINGWNS KAAEVTGLAV EQAIGKPVSD IVEDDSAITV KNMLALALQG HEERGAEIRI RAFGPKRKSS
0701: PIELVVNTCC SRDTTNNVHG VCFIGQDVTG QKTLIEKYSR VQGDYARIMW SPSTLIPPIF MTTENGLCSE WNDAMQKLSG IRREEAVNKM LLGEVFTSND
0801: SCCRLQDHDT LTKLRIALNA VSSGQDNMEK LLFGFYHRDG RFIEALLSAN KRTDMEGKVT GVLCFVQVPS PELQYVLQVQ RISEQAMACA VNKMAYLRQQ
0901: VENPEKAISF LQDFLHSSGL NEEQKQLLST SVSCREQLAK VISDSDIEGI EDGYVQLGCS EFSLEESLEA VVKQVMELSI ERKVQIICDY PQEVSLMRLY
1001: GDSLRLQQIL SETLSSCIRF TPALKGLCVS FKVMSRIEAI GKRMKRVELE FRIIHPAPGL PDDLVREMFQ PLRKDTSREG LGLHITQKMV KLMEGGTLRY
1101: LRESEMSAFV ILAEFPLI
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
Arabidopsis Description
PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.