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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • nucleus 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d000219_P001
Zm00001d006712_P001
Zm00001d012117_P001
Zm00001d013262_P001
Zm00001d018728_P001
Zm00001d022520_P001
Zm00001d024238_P001
Zm00001d025231_P001
Zm00001d028905_P001
Zm00001d034038_P002
Zm00001d047632_P001
Zm00001d050162_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G35840.1 Zm00001d000219_P001 AT2G18790.1 15273290
AT5G35840.1 Zm00001d024238_P001 AT2G18790.1 15273290
AT5G35840.1 Zm00001d025231_P001 AT2G18790.1 15273290
AT5G35840.1 Zm00001d028905_P001 AT2G18790.1 15273290
AT5G35840.1 Zm00001d047632_P001 AT2G18790.1 15273290
AT5G35840.1 Zm00001d000219_P001 AT2G18790.1 19286967
AT5G35840.1 Zm00001d024238_P001 AT2G18790.1 19286967
AT5G35840.1 Zm00001d025231_P001 AT2G18790.1 19286967
AT5G35840.1 Zm00001d028905_P001 AT2G18790.1 19286967
AT5G35840.1 Zm00001d047632_P001 AT2G18790.1 19286967
AT5G35840.1 Zm00001d000219_P001 AT4G16250.1 19286967
AT5G35840.1 Zm00001d024238_P001 AT4G16250.1 19286967
AT5G35840.1 Zm00001d025231_P001 AT4G16250.1 19286967
AT5G35840.1 Zm00001d028905_P001 AT4G16250.1 19286967
AT5G35840.1 Zm00001d047632_P001 AT4G16250.1 19286967
AT5G35840.1 Zm00001d006712_P001 AT5G35840.1 15273290
AT5G35840.1 Zm00001d012117_P001 AT5G35840.1 15273290
AT5G35840.1 Zm00001d013262_P001 AT5G35840.1 15273290
AT5G35840.1 Zm00001d018728_P001 AT5G35840.1 15273290
AT5G35840.1 Zm00001d022520_P001 AT5G35840.1 15273290
AT5G35840.1 Zm00001d034038_P002 AT5G35840.1 15273290
AT5G35840.1 Zm00001d050162_P001 AT5G35840.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d018728_P001 Maize cytosol, mitochondrion 14.73 94.84
Zm00001d006712_P001 Maize peroxisome 12.04 94.29
EER93439 Sorghum plastid 76.88 92.86
Zm00001d034038_P002 Maize peroxisome 76.59 92.51
TraesCS5D01G401000.1 Wheat cytosol, plastid 70.9 85.34
HORVU5Hr1G095530.2 Barley plastid 70.46 84.22
TraesCS5A01G391300.2 Wheat cytosol, plastid 70.68 83.25
Zm00001d050162_P001 Maize cytosol 8.02 79.71
TraesCS5B01G396200.1 Wheat plastid 66.81 79.51
Zm00001d022520_P001 Maize cytosol 8.24 77.4
Zm00001d012117_P001 Maize cytosol 8.24 77.4
Os03t0752100-01 Rice cytosol 12.76 76.42
GSMUA_Achr4P32940_001 Banana cytosol 6.35 75.0
GSMUA_Achr6P00080_001 Banana mitochondrion 51.57 70.49
VIT_12s0057g00980.t01 Wine grape cytosol, plastid 57.26 70.21
PGSC0003DMT400044822 Potato plastid 52.3 64.02
Solyc07g045480.2.1 Tomato plastid 51.71 63.42
GSMUA_Achr4P32930_001 Banana cytosol 26.04 60.61
AT5G35840.1 Thale cress mitochondrion 46.9 57.88
CDY38546 Canola cytosol, plastid 46.61 57.21
CDY06455 Canola cytosol, mitochondrion, nucleus, plastid 46.61 57.16
Bra039485.1-P Field mustard cytosol, plastid 46.54 57.12
Zm00001d028905_P001 Maize extracellular 42.89 50.65
Zm00001d033799_P001 Maize cytosol 41.58 50.4
Zm00001d013402_P005 Maize nucleus 41.36 50.13
Zm00001d047632_P001 Maize plastid 42.3 49.74
Zm00001d008542_P001 Maize cytosol 8.1 45.87
Zm00001d025231_P001 Maize cytosol 3.79 32.5
Zm00001d000219_P001 Maize cytosol 2.48 30.63
Zm00001d024238_P001 Maize cytosol 7.88 24.55
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10
Gene3D:3.40.1360.10UniProt:A0A1D6GGX9ProteinID:AQK62798.1InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155
GO:GO:0000160GO:GO:0000166GO:GO:0000737GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005694GO:GO:0006139GO:GO:0006259GO:GO:0006351
GO:GO:0006355GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009058GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009628
GO:GO:0009881GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0016853GO:GO:0017006
GO:GO:0018298GO:GO:0019538GO:GO:0023014GO:GO:0038023GO:GO:0042803GO:GO:0050896
InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/PInterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467
InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2
InterPro:PAS_foldPFAM:PF00360PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518
PFAM:PF04406PFAM:PF08446PRINTS:PR01033PFscan:PS50046PFscan:PS50109PFscan:PS50112
PANTHER:PTHR43719PANTHER:PTHR43719:SF4InterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_cen-regSMART:SM00065
SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874
SUPFAM:SSF56726InterPro:Spo11/TopoVI_A_NInterPro:Spo11/TopoVI_A_sfTIGRFAMs:TIGR00229InterPro:TOPRIM_Topo6A/Spo11UniParc:UPI00084437D6
EnsemblPlantsGene:Zm00001d013262EnsemblPlants:Zm00001d013262_P001EnsemblPlants:Zm00001d013262_T001SEG:seg::
Description
topoisomerase-like enzyme1 topoisomerase-like enzyme1
Coordinates
chr5:-:7372367..7382139
Molecular Weight (calculated)
153360.0 Da
IEP (calculated)
6.487
GRAVY (calculated)
-0.095
Length
1371 amino acids
Sequence
(BLAST)
0001: MSSPSNNRGT CSRSSSARSK HSARVVAQTP VDAQLHADFE GSQRHFDYSS SVGAANRPSA STSTVSTYLQ NMQRGRYIQP FGCLLAVHPD TFALLAYSEN
0101: APEMLDLTPH AVPTIDQRDA LTIGADVRTL FRSQSSVALH KAATFGEVNL LNPILVHART SGKPFYAILH RIDVGLVIDL EPFNPADVPV TAAGALKSYK
0201: LAAKAISRLQ SLPSGNLSLL CDVLVREVSE LTGYDRVMAY KFHEDEHGEV ISECRRSDLE PYLGLHYPAT DIPQASRFLF MKNKMRMICD FSATPVLIIQ
0301: DGSLAQPVSL CGSTLRASHG CHAQYMANMG SVASLVMSVT INDDEEEDGD TDSDQQPKGR KLWGLVVCHH TSPRFVPFPL RYACEFLLQV FGIQLSKEVE
0401: LAAQAKERHI LRTQTLLCDM LLRDALVGIF TQSPNVMDLV KCDGAALYYQ NQVLVLGSTP SESEIKSIAT WLQENHDGST GLSTDSLVEA GYPGAAALRE
0501: VVCGMVAIKI SSKNFIFWFR SHTTKEIKWS GAKHEPFDAD DNGRKMHPRS SFKAFLEVVK WRSVPWEDVE MDAIHSLQLI LRDSLQGEDA NRNNIRSIVK
0601: APSDDMKKLQ GLLELRTVTN EMVRLIETAT APVLAVDIAG NINGWNKKAA ELTGLPVMEA IGRPLIDLVV ADSVEVVKQI LDSALQGIEE QNLEIKLKTF
0701: HEQECCGPVI LMINSCCSRD LSEKVIGVCF VAQDLTRQKM IMDKYTRIQG DYVAIIKNPS ELIPPIFMIN DLGSCLEWNK AMQKITGMKR EDAINKLLIG
0801: EVFTLHDYGC RVKDHATLTK LSILMNAVIS GQDPEKLLFG FFGTGGKYIE SLLTVNKRTN AEGKITGALC FLHVASPELQ HALEVQKMSE QAATNSFKEL
0901: TYIRQELRNP LNGMQFTYNL LKPSELTEDQ RQLVSSNVLC QDQLKKILHD TDLESIEQCY METNTVEFNL EEALNTVLMQ GIPLGKEKRI SIERDWPVEV
1001: SHMYIYGDNI RLQQVLADYL ACALQFTQPA EGHIVLQVIP KKENIGSGMQ IAHLEFRIVH PAPGVPEALI QEMFQHNPGV SREGLGLYIS QKLVKTMSGT
1101: LQYLREADTS SFIILIEFPV AQLSSKRSKP SPNVLLRVLF VVQQLLQQNK HCSKRDIYYM YPSIFVEVAV VDRAINDICI LFKCSRHNLN VVPVVKGLVM
1201: GWIRFMEGEK KVYCITSVNA AFSIPVDIEA IKDVVSVAHY ILVVEKETVF QRLANDKFCE RNRCIVITQL AHDANLLRVP DIRWLGVFTS DFEEYCLPDC
1301: CLLRLSPEDR RKAEGILARC YLHREAPEWR SELEAMLQKG VKFEIEALSA NSISFLSHEY IPQKIKQGMH L
Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
Arabidopsis Description
PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.