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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 4
  • mitochondrion 2
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_05s0077g00940.t01
VIT_12s0057g00980.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G35840.1 VIT_05s0077g00940.t01 AT2G18790.1 15273290
AT5G35840.1 VIT_05s0077g00940.t01 AT2G18790.1 19286967
AT5G35840.1 VIT_05s0077g00940.t01 AT4G16250.1 19286967
AT5G35840.1 VIT_12s0057g00980.t01 AT5G35840.1 15273290
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr4P32940_001 Banana cytosol 7.87 75.86
PGSC0003DMT400044822 Potato plastid 74.78 74.64
Solyc07g045480.2.1 Tomato plastid 74.06 74.06
GSMUA_Achr6P00080_001 Banana mitochondrion 64.49 71.88
EER93439 Sorghum plastid 71.02 69.96
TraesCS5D01G401000.1 Wheat cytosol, plastid 70.3 69.01
Zm00001d034038_P002 Maize peroxisome 69.95 68.9
HORVU5Hr1G095530.2 Barley plastid 69.77 68.0
TraesCS5A01G391300.2 Wheat cytosol, plastid 70.04 67.27
AT5G35840.1 Thale cress mitochondrion 64.49 64.9
TraesCS5B01G396200.1 Wheat plastid 66.28 64.32
Zm00001d018728_P001 Maize cytosol, mitochondrion 12.25 64.32
GSMUA_Achr4P32930_001 Banana cytosol 33.72 64.01
Bra039485.1-P Field mustard cytosol, plastid 63.86 63.92
CDY06455 Canola cytosol, mitochondrion, nucleus, plastid 63.86 63.86
CDY38546 Canola cytosol, plastid 63.77 63.83
VIT_14s0060g00100.t01 Wine grape nucleus 59.66 59.34
Zm00001d013262_P001 Maize nucleus, plastid 70.21 57.26
VIT_05s0077g00940.t01 Wine grape cytosol 56.62 56.07
Zm00001d006712_P001 Maize peroxisome 8.77 56.0
Zm00001d050162_P001 Maize cytosol 6.8 55.07
Os03t0752100-01 Rice cytosol 11.18 54.59
VIT_10s0003g02680.t01 Wine grape vacuole 50.27 53.32
Zm00001d012117_P001 Maize cytosol 6.89 52.74
Zm00001d022520_P001 Maize cytosol 6.89 52.74
Protein Annotations
Gene3D:1.10.287.130EntrezGene:100258014wikigene:100258014MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270
Gene3D:3.30.450.40Gene3D:3.30.565.10ProteinID:ACC60967ProteinID:ACC60967.1ProteinID:CCB51743ProteinID:CCB51743.1
EMBL:EU436651UniProt:F6HHP7EMBL:FN595759InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155
GO:GO:0000160GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014
GO:GO:0038023GO:GO:0042803GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/P
InterPro:His_kinase_domInterPro:IPR000014InterPro:IPR000700InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016
InterPro:IPR036890EntrezGene:LOC100258014wikigene:LOC100258014InterPro:PASInterPro:PAS-assoc_CInterPro:PAS-like_dom_sf
InterPro:PAS_2InterPro:PAS_foldPFAM:PF00360PFAM:PF00989PFAM:PF01590PFAM:PF02518
PFAM:PF08446PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109
PFscan:PS50112PFscan:PS50113PANTHER:PTHR43719PANTHER:PTHR43719:SF4InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachment
InterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regSMART:SM00065SMART:SM00091SMART:SM00387
SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874TIGR:TC62672TIGRFAMs:TIGR00229UniParc:UPI00015CA854
ArrayExpress:VIT_12s0057g00980EnsemblPlantsGene:VIT_12s0057g00980EnsemblPlants:VIT_12s0057g00980.t01unigene:Vvi.271RefSeq:XP_002268724RefSeq:XP_002268724.1
SEG:seg:::::
Description
Phytochrome [Source:UniProtKB/TrEMBL;Acc:F6HHP7]
Coordinates
chr12:-:9664313..9670137
Molecular Weight (calculated)
124059.0 Da
IEP (calculated)
5.890
GRAVY (calculated)
-0.092
Length
1118 amino acids
Sequence
(BLAST)
0001: MSSKSTNKTN CSRSSSARSK HGARVVAQTP IDAQLHVNFE ESERHFDYSA SVDFNISSST SDVPSSTVSA YLQKMQRGNL IQPFGCMIAV DEQNLTVLAY
0101: SENAPEMLDL APHAVPSIEQ QEALAIGTDV RTLFRSSGAA ALQKAANFGE VNLLNPILVH CRNSGKPFYA ILHRIDVGLI IDLEPVNPAD VPVTAAGALK
0201: SYKLAAKAIS RLQSLPSGNI SLLCDVLVKE ASELTGYDRV MVYKFHEDEH GEVIAECRKP DLEPYLGLHY PATDIPQASR FLFMKNKVRM ICDCLAPPVK
0301: VIQNKRLAQP LSLCGSTLRS PHGCHAQYMA NMGSVASLVM SVTINEEDDD TESEQQKGRK LWGLVVCHNT SPRFVPFPLR YACEFLVQVF GVQISKEMEL
0401: AAQMKEKHIL QTQTVLCDML LRDAPVGIVT QSPNVMDLVR CDGAALYYQK KFWLLGVTPT EAQIRDIVEW LLEYHSGSTG LSTDSLMEAG YPAASVLGDA
0501: VCGIAAVKIN SNDFLFWFRS HTAKEIKWGG AKHDPDDKDD GRKMHPRSSF KAFLEVVKRR SLPWEDVEMD AIHSLQLILR GSLQDKSADD SKMIVNVPSV
0601: DASIKMADDL RIVTNEMVRL IETASVPILA VDAAGCINGW NNKAAELTGL IMQQAIGMPL INLVENDSAD MVKKMLSMAL QGIEEQNVEI KLKTFGPQEN
0701: NGPVILVVNA CCSRDIKDNV VGVCFVGQDI TGQKMVMDKY TRIQGDYVGI VRNPSALIPP IFMMDEHGRC LEWNDAMQNL SGLKREEATD RMLLGEVFTV
0801: NNFGCQVKDH DTLTKLRILL NGAIAGQDAQ KLLFGFFDQH GKYIEALLSA NKRTDAEGKI TGVLCFLHVA SPELQHAMQV QRISEQAAAD SLKKLAYIRQ
0901: QIRKPLNGIM FIQNLMDSSE LSQDQKKFLR TSMMCQEQLT KIVDDTDLES IEECYMELNS GEFNLGEVLE VVISQAMILS RERRVEIIYD SPAEVSSMLL
1001: YGDNLRLQQV LSDFLTNALL FTPAFEGSSV ALRVIPRREC IGTKVHIVHL EFRIAHPAPG IPEDLIQQMF HHSQGVSREG LGLYINQKLV KIMNGTVQYL
1101: REAQGSSFII LIEFPLAH
Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
Arabidopsis Description
PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.