Factsheet for Zm00001d018728_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000219_P001
Zm00001d006712_P001
Zm00001d012117_P001
Zm00001d013262_P001
Zm00001d018728_P001
Zm00001d022520_P001
Zm00001d024238_P001
Zm00001d025231_P001
Zm00001d028905_P001
Zm00001d034038_P002
Zm00001d047632_P001
Zm00001d050162_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	Zm00001d000219_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d024238_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d025231_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d028905_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d047632_P001	AT2G18790.1	15273290
AT5G35840.1	Zm00001d000219_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d024238_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d025231_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d028905_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d047632_P001	AT2G18790.1	19286967
AT5G35840.1	Zm00001d000219_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d024238_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d025231_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d028905_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d047632_P001	AT4G16250.1	19286967
AT5G35840.1	Zm00001d006712_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d012117_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d013262_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d018728_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d022520_P001	AT5G35840.1	15273290
AT5G35840.1	Zm00001d034038_P002	AT5G35840.1	15273290
AT5G35840.1	Zm00001d050162_P001	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050162_P001	Maize	cytosol	47.89	73.91
Zm00001d022520_P001	Maize	cytosol	48.83	71.23
Zm00001d012117_P001	Maize	cytosol	48.83	71.23
Zm00001d034038_P002	Maize	peroxisome	88.26	16.56
TraesCS5D01G401000.1	Wheat	cytosol, plastid	79.81	14.93
Zm00001d013262_P001	Maize	nucleus, plastid	94.84	14.73
TraesCS5B01G396200.1	Wheat	plastid	79.34	14.67
HORVU5Hr1G095530.2	Barley	plastid	78.87	14.65
TraesCS5A01G391300.2	Wheat	cytosol, plastid	79.81	14.6
GSMUA_Achr6P00080_001	Banana	mitochondrion	65.26	13.86
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	64.32	12.25
PGSC0003DMT400044822	Potato	plastid	60.09	11.43
Solyc07g045480.2.1	Tomato	plastid	57.75	11.0
GSMUA_Achr4P32930_001	Banana	cytosol	29.58	10.7
Zm00001d013402_P005	Maize	nucleus	53.99	10.17
Zm00001d033799_P001	Maize	cytosol	53.05	9.99
Zm00001d028905_P001	Maize	extracellular	52.58	9.65
AT5G35840.1	Thale cress	mitochondrion	49.77	9.54
Zm00001d047632_P001	Maize	plastid	50.7	9.26
CDY38546	Canola	cytosol, plastid	47.42	9.04
Bra039485.1-P	Field mustard	cytosol, plastid	47.42	9.04
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	47.42	9.03
Zm00001d008542_P001	Maize	cytosol	2.35	2.07
Zm00001d024238_P001	Maize	cytosol	4.23	2.05
Os03t0752100-01	Rice	cytosol	0.94	0.87
Zm00001d000219_P001	Maize	cytosol	0.0	0.0
Zm00001d006712_P001	Maize	peroxisome	0.0	0.0
GSMUA_Achr4P32940_001	Banana	cytosol	0.0	0.0
Zm00001d025231_P001	Maize	cytosol	0.0	0.0

Protein Annotations

MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	UniProt:A0A1D6HRS3	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009605
GO:GO:0009628	GO:GO:0009987	GO:GO:0018298	GO:GO:0019538	InterPro:IPR000014	ProteinID:ONM51183.1
InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00989	PRINTS:PR01033
PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF4	InterPro:Phytochrome	InterPro:Phytochrome_cen-reg	SUPFAM:SSF55781
SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI0004DE7D3F	EnsemblPlantsGene:Zm00001d018728	EnsemblPlants:Zm00001d018728_P001	EnsemblPlants:Zm00001d018728_T001

Description

Phytochrome B

Coordinates

chr7:+:3154563..3155688

Molecular Weight (calculated)

24087.2 Da

IEP (calculated)

6.366

GRAVY (calculated)

-0.226

Length

213 amino acids

Sequence
(BLAST)

001: MVAIKISSKN FIFWFRSHTT KEIKWSGAKH EPFDADDNGR KMHPRSSFKA FLEVVKWRSV PWEDVEMDAI HSLQLILRDS LQDEDANRNN IRSIVKAPSD
101: NMKKIQGLLE LRTVTNEMVR LIETATARVL AVDIPGNING WNKKATELPG LPVMEAIGRP LIDLVVADSV EVVKQILDSA LQGIEEQNLE IKLKTFHEQE
201: CCGPVILMIN SSS

Best Arabidopsis Sequence Match ( AT1G09570.2 )
(BLAST)

0001: MASHAVPSVG EHPVLGIGTD IRSLFTAPSA SALQKALGFG DVSLLNPILV HCRTSAKPFY AIIHRVTGSI IIDFEPVKPY EVPMTAAGAL QSYKLAAKAI
0101: TRLQSLPSGS MERLCDTMVQ EVFELTGYDR VMAYKFHEDD HGEVVSEVTK PGLEPYLGLH YPATDIPQAA RFLFMKNKVR MIVDCNAKHA RVLQDEKLSF
0201: DLTLCGSTLR APHSCHLQYM ANMDSIASLV MAVVVNEEDG EGDAPDATTQ PQKRKRLWGL VVCHNTTPRF VPFPLRYACE FLAQVFAIHV NKEVELDNQM
0301: VEKNILRTQT LLCDMLMRDA PLGIVSQSPN IMDLVKCDGA ALLYKDKIWK LGTTPSEFHL QEIASWLCEY HMDSTGLSTD SLHDAGFPRA LSLGDSVCGM
0401: AAVRISSKDM IFWFRSHTAG EVRWGGAKHD PDDRDDARRM HPRSSFKAFL EVVKTRSLPW KDYEMDAIHS LQLILRNAFK DSETTDVNTK VIYSKLNDLK
0501: IDGIQELEAV TSEMVRLIET ATVPILAVDS DGLVNGWNTK IAELTGLSVD EAIGKHFLTL VEDSSVEIVK RMLENALEGT EEQNVQFEIK THLSRADAGP
0601: ISLVVNACAS RDLHENVVGV CFVAHDLTGQ KTVMDKFTRI EGDYKAIIQN PNPLIPPIFG TDEFGWCTEW NPAMSKLTGL KREEVIDKML LGEVFGTQKS
0701: CCRLKNQEAF VNLGIVLNNA VTSQDPEKVS FAFFTRGGKY VECLLCVSKK LDREGVVTGV FCFLQLASHE LQQALHVQRL AERTAVKRLK ALAYIKRQIR
0801: NPLSGIMFTR KMIEGTELGP EQRRILQTSA LCQKQLSKIL DDSDLESIIE GCLDLEMKEF TLNEVLTAST SQVMMKSNGK SVRITNETGE EVMSDTLYGD
0901: SIRLQQVLAD FMLMAVNFTP SGGQLTVSAS LRKDQLGRSV HLANLEIRLT HTGAGIPEFL LNQMFGTEED VSEEGLSLMV SRKLVKLMNG DVQYLRQAGK
1001: SSFIITAELA AANK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.