Factsheet for TraesCS5B01G396200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G122500.2
TraesCS4B01G182400.1
TraesCS4D01G183400.1
TraesCS5A01G391300.2
TraesCS5B01G396200.1
TraesCS5D01G401000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G35840.1	TraesCS4A01G122500.2	AT2G18790.1	15273290
AT5G35840.1	TraesCS4B01G182400.1	AT2G18790.1	15273290
AT5G35840.1	TraesCS4D01G183400.1	AT2G18790.1	15273290
AT5G35840.1	TraesCS4A01G122500.2	AT2G18790.1	19286967
AT5G35840.1	TraesCS4B01G182400.1	AT2G18790.1	19286967
AT5G35840.1	TraesCS4D01G183400.1	AT2G18790.1	19286967
AT5G35840.1	TraesCS4A01G122500.2	AT4G16250.1	19286967
AT5G35840.1	TraesCS4B01G182400.1	AT4G16250.1	19286967
AT5G35840.1	TraesCS4D01G183400.1	AT4G16250.1	19286967
AT5G35840.1	TraesCS5A01G391300.2	AT5G35840.1	15273290
AT5G35840.1	TraesCS5B01G396200.1	AT5G35840.1	15273290
AT5G35840.1	TraesCS5D01G401000.1	AT5G35840.1	15273290

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G401000.1	Wheat	cytosol, plastid	91.15	92.19
TraesCS5A01G391300.2	Wheat	cytosol, plastid	92.1	91.15
HORVU5Hr1G095530.2	Barley	plastid	89.24	89.63
Zm00001d034038_P002	Maize	peroxisome	79.86	81.06
EER93439	Sorghum	plastid	79.77	80.97
Zm00001d018728_P001	Maize	cytosol, mitochondrion	14.67	79.34
GSMUA_Achr4P32940_001	Banana	cytosol	7.9	78.45
Zm00001d013262_P001	Maize	nucleus, plastid	79.51	66.81
VIT_12s0057g00980.t01	Wine grape	cytosol, plastid	64.32	66.28
GSMUA_Achr6P00080_001	Banana	mitochondrion	57.55	66.1
Zm00001d050162_P001	Maize	cytosol	7.73	64.49
PGSC0003DMT400044822	Potato	plastid	60.33	62.05
Zm00001d022520_P001	Maize	cytosol	7.81	61.64
Solyc07g045480.2.1	Tomato	plastid	59.55	61.36
Zm00001d012117_P001	Maize	cytosol	7.73	60.96
TraesCS4B01G052000.1	Wheat	mitochondrion	43.58	56.72
AT5G35840.1	Thale cress	mitochondrion	53.91	55.9
Os03t0752100-01	Rice	cytosol	10.94	55.02
CDY06455	Canola	cytosol, mitochondrion, nucleus, plastid	52.95	54.56
CDY38546	Canola	cytosol, plastid	52.86	54.52
Bra039485.1-P	Field mustard	cytosol, plastid	52.78	54.43
GSMUA_Achr4P32930_001	Banana	cytosol	27.43	53.65
TraesCS4B01G182400.1	Wheat	plastid	50.87	50.26
Zm00001d006712_P001	Maize	peroxisome	7.55	49.71

Protein Annotations

MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	InterPro:GAF	InterPro:GAF-like_dom_sf
GO:GO:0000155	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628
GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006	GO:GO:0018298
GO:GO:0019538	GO:GO:0038023	GO:GO:0042803	InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014
InterPro:IPR005467	InterPro:IPR016132	InterPro:IPR029016	InterPro:PAS	InterPro:PAS-like_dom_sf	InterPro:PAS_2
InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00512	PFAM:PF00989	PFAM:PF01590	PFAM:PF08446
PIRSF:PIRSF000084	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109	PFscan:PS50112
PANTHER:PTHR43719	PANTHER:PTHR43719:SF4	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome	InterPro:Phytochrome_A-E
InterPro:Phytochrome_cen-reg	SMART:SM00065	SMART:SM00091	SMART:SM00388	SUPFAM:SSF55781	SUPFAM:SSF55785
TIGRFAMs:TIGR00229	EnsemblPlantsGene:TraesCS5B01G396200	EnsemblPlants:TraesCS5B01G396200.1	TIGR:cd00082	TIGR:cd00130	SEG:seg

Description

No Description!

Coordinates

chr5B:+:573216965..573221131

Molecular Weight (calculated)

126947.0 Da

IEP (calculated)

5.956

GRAVY (calculated)

-0.209

Length

1152 amino acids

Sequence
(BLAST)

0001: MSSSRSNNRP ACSRGSSARS KHSERVVAQT PVDARLHAEF EGSQRHFDYS SSVSALNRSG ASTSSAVSAY LQNMQRGRYI QPFGCLLAIH SESFALLAYS
0101: ENAAEMLDLT PHAVPTIDQR DALAVGADVR TLFRSQSAVA LHKAAVFGEV NLLNPILVHA RTSGKPFYAI LHRIDVGLVI DLEPVNPADV PVTAAGALKS
0201: YKLAAKAISR LQSLPSGNLS LLCDVLVREV SELTGYDRVM AYKFHEDEHG EVIAECRRSD LEPYLGLHYP ATDIPQASRF LFMKNKVRMI CDCAASPVKL
0301: IQDDNLSQPI SLCGSTMRAP HGCHAQYMAN MGSIASLVMS ITINEDDDED GDTGSDQQPK GRKLWGLVVC HHTSPRFVPF PLRYACEFLL QVFGIQLNKE
0401: VELASQAKER HILRTQTLLC DMLLRDAPVG IFTQSPNVMD LVKCDGAALC YQNQIMVLGS TPSEGEIKKI VAWLLECHDG STGLSTDSLL EAGYPGASAL
0501: GEVVCGMAAI KISSKGFIFW FRSHTAKEIK WGGAKQEPGD ADDNGRRMHP RSSFRAFLEV VKWRSVPWED VEMDAIHSLQ LILRGSLQDE DATDNNAGSI
0601: VEAPSDDIKK IQGLLELRIV TNEMVRLIET ATAPILAVDI VGNINGWNNK VAEITGLPTT EAIGMLLVDL VEGDSVEVVK QMLNSALQGT EEQNLEIKLK
0701: TFHQQESKGP VVLMVNACCS RDLSEKVVGV CLVAQDLTGH KMIMDKYTRI QGDYVAIVKN PNELIPPIFM INDLGSCLEW NEAMQKITGI KREDAIDKLL
0801: IGEVFTLHDY GCRVKDQATL TKLSILMNTV ISGQEPEKLA FGFFNTDGKY MESLLTANKR TDAEGKITGA LCFLHVASPE LQHALQVQKM SEQAATHSFK
0901: ELTYIRQELK NPLNGMQFTR KLLEPSDLTE EQRQLFASNV LCQEQLKKIL HDNDLEGIEQ CYMEMNAVEF NLEEALNTVL MQGMSLSKEK QISLDRDWPV
1001: EVSSIYLYGD NLRLQQVLAD YLACTLQFTR PAEGPIVLQV IPKKEHIGSG MQIAHLEFSI NIFGMVTVQD QSHPGHSDKN YSGQLTCPPS TGRPRGTDTG
1101: DVPARPRGIP RRPRPAHKPE AGEDDERHGT VPPRSGELVV HRSGRVPGGA AQ

Best Arabidopsis Sequence Match ( AT5G35840.1 )
(BLAST)

0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I

Arabidopsis Description

PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.