Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0752100-01 | Rice | cytosol | 76.57 | 58.52 |
| Zm00001d025231_P001 | Maize | cytosol | 29.14 | 31.88 |
| Zm00001d000219_P001 | Maize | cytosol | 18.86 | 29.73 |
| GSMUA_Achr4P32930_001 | Banana | cytosol | 49.71 | 14.77 |
| EER93439 | Sorghum | plastid | 89.71 | 13.83 |
| Zm00001d034038_P002 | Maize | peroxisome | 87.43 | 13.48 |
| TraesCS5D01G401000.1 | Wheat | cytosol, plastid | 81.71 | 12.55 |
| HORVU5Hr1G095530.2 | Barley | plastid | 82.29 | 12.55 |
| Zm00001d024238_P001 | Maize | cytosol | 30.86 | 12.27 |
| TraesCS5A01G391300.2 | Wheat | cytosol, plastid | 81.14 | 12.2 |
| Zm00001d013262_P001 | Maize | nucleus, plastid | 94.29 | 12.04 |
| GSMUA_Achr6P00080_001 | Banana | mitochondrion | 60.0 | 10.47 |
| VIT_12s0057g00980.t01 | Wine grape | cytosol, plastid | 56.0 | 8.77 |
| Solyc07g045480.2.1 | Tomato | plastid | 49.14 | 7.69 |
| PGSC0003DMT400044822 | Potato | plastid | 49.14 | 7.68 |
| TraesCS5B01G396200.1 | Wheat | plastid | 49.71 | 7.55 |
| AT5G35840.1 | Thale cress | mitochondrion | 44.57 | 7.02 |
| CDY38546 | Canola | cytosol, plastid | 42.29 | 6.62 |
| Bra039485.1-P | Field mustard | cytosol, plastid | 41.71 | 6.54 |
| CDY06455 | Canola | cytosol, mitochondrion, nucleus, plastid | 41.71 | 6.53 |
| Zm00001d047632_P001 | Maize | plastid | 30.86 | 4.63 |
| Zm00001d028905_P001 | Maize | extracellular | 29.71 | 4.48 |
| Zm00001d033799_P001 | Maize | cytosol | 28.57 | 4.42 |
| Zm00001d013402_P005 | Maize | nucleus | 27.43 | 4.24 |
| Zm00001d012117_P001 | Maize | cytosol | 0.57 | 0.68 |
| Zm00001d022520_P001 | Maize | cytosol | 0.57 | 0.68 |
| Zm00001d018728_P001 | Maize | cytosol, mitochondrion | 0.0 | 0.0 |
| Zm00001d008542_P001 | Maize | cytosol | 0.0 | 0.0 |
| GSMUA_Achr4P32940_001 | Banana | cytosol | 0.0 | 0.0 |
| Zm00001d050162_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.565.10 | MapMan:35.1 | UniProt:A0A1D6EZS8 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:His_kinase_dom |
| InterPro:IPR005467 | InterPro:IPR036890 | ProteinID:ONM24778.1 | PFAM:PF02518 | PFscan:PS50109 | PANTHER:PTHR43719 |
| PANTHER:PTHR43719:SF4 | SMART:SM00387 | SUPFAM:SSF55874 | UniParc:UPI00022194FA | EnsemblPlantsGene:Zm00001d006712 | EnsemblPlants:Zm00001d006712_P001 |
| EnsemblPlants:Zm00001d006712_T001 | SEG:seg | : | : | : | : |
Description
Phytochrome C
Coordinates
chr2:+:215015489..215016952
Molecular Weight (calculated)
19635.0 Da
IEP (calculated)
6.353
GRAVY (calculated)
-0.023
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: METNTAEFNL EEALNTVLMQ GIPLGKEKRI SIERDWPVEV SHMYIYGDNI RLQQVLADYL ACALQFTQPA EGHIVLQVIP KKENIGSGMQ IAHLEFKIVH
101: PALGVPEALI QEMFQHNPGV SREGLGLYIS QKLVKTMSGA LQYLREANIS SFIILIEFPV AQLSSKWSKP SPSKF
101: PALGVPEALI QEMFQHNPGV SREGLGLYIS QKLVKTMSGA LQYLREANIS SFIILIEFPV AQLSSKWSKP SPSKF
0001: MSSNTSRSCS TRSRQNSRVS SQVLVDAKLH GNFEESERLF DYSASINLNM PSSSCEIPSS AVSTYLQKIQ RGMLIQPFGC LIVVDEKNLK VIAFSENTQE
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
0101: MLGLIPHTVP SMEQREALTI GTDVKSLFLS PGCSALEKAV DFGEISILNP ITLHCRSSSK PFYAILHRIE EGLVIDLEPV SPDEVPVTAA GALRSYKLAA
0201: KSISRLQALP SGNMLLLCDA LVKEVSELTG YDRVMVYKFH EDGHGEVIAE CCREDMEPYL GLHYSATDIP QASRFLFMRN KVRMICDCSA VPVKVVQDKS
0301: LSQPISLSGS TLRAPHGCHA QYMSNMGSVA SLVMSVTING SDSDEMNRDL QTGRHLWGLV VCHHASPRFV PFPLRYACEF LTQVFGVQIN KEAESAVLLK
0401: EKRILQTQSV LCDMLFRNAP IGIVTQSPNI MDLVKCDGAA LYYRDNLWSL GVTPTETQIR DLIDWVLKSH GGNTGFTTES LMESGYPDAS VLGESICGMA
0501: AVYISEKDFL FWFRSSTAKQ IKWGGARHDP NDRDGKRMHP RSSFKAFMEI VRWKSVPWDD MEMDAINSLQ LIIKGSLQEE HSKTVVDVPL VDNRVQKVDE
0601: LCVIVNEMVR LIDTAAVPIF AVDASGVING WNSKAAEVTG LAVEQAIGKP VSDLVEDDSV ETVKNMLALA LEGSEERGAE IRIRAFGPKR KSSPVELVVN
0701: TCCSRDMTNN VLGVCFIGQD VTGQKTLTEN YSRVKGDYAR IMWSPSTLIP PIFITNENGV CSEWNNAMQK LSGIKREEVV NKILLGEVFT TDDYGCCLKD
0801: HDTLTKLRIG FNAVISGQKN IEKLLFGFYH RDGSFIEALL SANKRTDIEG KVTGVLCFLQ VPSPELQYAL QVQQISEHAI ACALNKLAYL RHEVKDPEKA
0901: ISFLQDLLHS SGLSEDQKRL LRTSVLCREQ LAKVISDSDI EGIEEGYVEL DCSEFGLQES LEAVVKQVME LSIERKVQIS CDYPQEVSSM RLYGDNLRLQ
1001: QILSETLLSS IRFTPALRGL CVSFKVIARI EAIGKRMKRV ELEFRIIHPA PGLPEDLVRE MFQPLRKGTS REGLGLHITQ KLVKLMERGT LRYLRESEMS
1101: AFVILTEFPL I
Arabidopsis Description
PHYCPhytochrome C [Source:UniProtKB/Swiss-Prot;Acc:P14714]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.