Factsheet for Zm00001d013402_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91090	Sorghum	nucleus	96.73	96.73
Zm00001d033799_P001	Maize	cytosol	95.93	95.93
OQU91089	Sorghum	cytosol	15.03	94.97
Zm00001d008542_P001	Maize	cytosol	19.1	89.26
Os03t0719800-01	Rice	plastid	87.62	87.85
TraesCS4B01G052000.1	Wheat	mitochondrion	66.4	84.86
HORVU4Hr1G008610.2	Barley	mitochondrion	84.08	84.16
TraesCS4A01G262900.1	Wheat	mitochondrion	83.73	83.81
TraesCS4D01G052200.1	Wheat	plastid	83.29	83.07
HORVU0Hr1G023250.4	Barley	cytosol	25.11	81.61
HORVU1Hr1G068750.7	Barley	cytosol	25.11	80.0
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	65.08	68.47
VIT_14s0060g00100.t01	Wine grape	nucleus	64.9	65.3
CDY06362	Canola	cytosol, plastid	63.66	64.23
KRG90417	Soybean	nucleus	63.57	64.02
Bra031672.1-P	Field mustard	cytosol, plastid	63.13	63.69
Solyc10g044670.1.1	Tomato	extracellular	63.22	63.67
PGSC0003DMT400040772	Potato	cytosol	62.95	63.4
CDY22632	Canola	cytosol, plastid	62.86	63.31
AT1G09570.3	Thale cress	cytosol	62.95	63.23
GSMUA_Achr5P27310_001	Banana	cytosol	8.58	62.58
KRG96653	Soybean	nucleus	62.16	62.21
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	62.95	61.33
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	63.4	60.2
CDX93501	Canola	cytosol	63.04	59.32
Bra020013.1-P	Field mustard	cytosol	62.86	58.76
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	48.01	55.75
Zm00001d018728_P001	Maize	cytosol, mitochondrion	10.17	53.99
Zm00001d034038_P002	Maize	peroxisome	51.02	50.84
Zm00001d028905_P001	Maize	extracellular	48.28	47.03
Zm00001d047632_P001	Maize	plastid	47.57	46.14
Zm00001d050162_P001	Maize	cytosol	5.48	44.93
Zm00001d012117_P001	Maize	cytosol	5.66	43.84
Zm00001d022520_P001	Maize	cytosol	5.66	43.84
Zm00001d013262_P001	Maize	nucleus, plastid	50.13	41.36
Zm00001d006712_P001	Maize	peroxisome	4.24	27.43
Zm00001d025231_P001	Maize	cytosol	3.27	23.12
Zm00001d024238_P001	Maize	cytosol	8.84	22.73
Zm00001d000219_P001	Maize	cytosol	2.21	22.52

Protein Annotations

Gene3D:1.10.287.130	MapMan:26.1.1.1	Gene3D:3.30.450.20	Gene3D:3.30.450.270	Gene3D:3.30.450.40	Gene3D:3.30.565.10
ProteinID:AAO73469.1	ProteinID:ABO30572.1	ProteinID:AQK63347.1	ProteinID:AQK63348.1	ProteinID:AQK63350.1	ProteinID:AQK63351.1
ProteinID:AQK63352.1	ProteinID:AQK63354.1	ProteinID:AQK63355.1	ProteinID:AQK63356.1	ProteinID:AQK63357.1	ProteinID:AQK63359.1
ProteinID:AQK63360.1	ProteinID:AQK63361.1	ProteinID:AQK63362.1	ProteinID:AQK63363.1	ProteinID:AQK63364.1	ProteinID:AQK63365.1
InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009584	GO:GO:0009585	GO:GO:0009605
GO:GO:0009628	GO:GO:0009881	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0017006
GO:GO:0018298	GO:GO:0019538	GO:GO:0023014	GO:GO:0038023	GO:GO:0042803	GO:GO:0050896
InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HisK_dim/P	InterPro:His_kinase_dom	InterPro:IPR000014	InterPro:IPR005467
InterPro:IPR016132	InterPro:IPR029016	InterPro:IPR036890	UniProt:P19862	InterPro:PAS	InterPro:PAS-like_dom_sf
InterPro:PAS_2	InterPro:PAS_fold	PFAM:PF00360	PFAM:PF00989	PFAM:PF01590	PFAM:PF02518
PFAM:PF08446	PIRSF:PIRSF000084	PRINTS:PR01033	ScanProsite:PS00245	PFscan:PS50046	PFscan:PS50109
PFscan:PS50112	PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_BS	InterPro:Phyto_chromo_attachment	InterPro:Phytochrome
InterPro:Phytochrome_A-E	InterPro:Phytochrome_cen-reg	UniProt:Q53ZT7	SMART:SM00065	SMART:SM00091	SMART:SM00387
SMART:SM00388	SUPFAM:SSF55781	SUPFAM:SSF55785	SUPFAM:SSF55874	TIGRFAMs:TIGR00229	UniParc:UPI000005FAFE
EnsemblPlantsGene:Zm00001d013402	EnsemblPlants:Zm00001d013402_P005	EnsemblPlants:Zm00001d013402_T005	SEG:seg	:	:

Description

phytochromeA2 phytochromeA2

Coordinates

chr5:+:10472323..10477868

Molecular Weight (calculated)

125157.0 Da

IEP (calculated)

6.311

GRAVY (calculated)

-0.184

Length

1131 amino acids

Sequence
(BLAST)

0001: MSSSRPAHSS SSSSRTRQSS RARILAQTTL DAELNAEYEE SGDSFDYSKL VEAQRSTPPE QQGRSGKVIA YLQHIQRGKL IQPFGCLLAL DEKSFRVIAF
0101: SENAPEMLTT VSHAVPNVDD PPKLGIGTNV RSLFTDPGAT ALQKALGFAD VSLLNPILVQ CKTSGKPFYA IVHRATGCLV VDFEPVKPTE FPATAAGALQ
0201: SYKLAAKAIS KIQSLPGGSM EALCNTVVKE VFDLTGYDRV MAYKFHEDEH GEVFAEITKP GIEPYIGLHY PATDIPQAAR FLFMKNKVRM ICDCRARSVK
0301: IIEDEALSID ISLCGSTLRA PHSCHLKYME NMNSIASLVM AVVVNENEED DEPEPEQPPQ QQKKKRLWGL IVCHHESPRY VPFPLRYACE FLAQVFAVHV
0401: NKEFELEKQI REKNILRMQT MLSDMLFKES SPLSIVSGSP NIMDLVKCDG AALLYGDKVW RLQTAPTESQ IRDIAFWLSE VHGDSTGLST DSLQDAGYPG
0501: AASLGDMICG MAVAKITSKD ILFWFRSHTA AEIKWGGAKH DPSDKDDNRR MHPRLSFKAF LEVVKTKSLP WSDYEMDAIH SLQLILRGTL NDASKPAQAS
0601: GLDNQIGDLK LDGLAELQAV TSEMVRLMET ATVPILAVDG NGLVNGWNQK VAELSGLRVD EAIGRHILTL VEDSSVSLVQ RMLYLALQGR EEKEVRFELK
0701: THGSKRDDGP VILVVNACAS RDLHDHVVGV CFVAQDMTVH KLVMDKFTRV EGDYKAIIHN PNPLIPPIFG ADQFGWCSEW NAAMTKLTGW HRDEVVDKML
0801: LGEVFNSSNA SCLLKSKDAF VRLCIVINSA LAGEEAEKAS FGFFDRNEKY VECLLSVNRK VNADGVVTGV FCFIHVPSDD LQHALHVQQA SEQTAQRKLK
0901: AFSYMRHAIN KPLSGMLYSR ETLKSTGLNE EQMRQVRVGD NCHRQLNKIL ADLDQDNITD KSSCLDLDMA EFVLQDVVVS AVSQVLIGCQ AKGIRVACNL
1001: PERSMKQKVY GDGIRLQQIV SDFLFVSVKF SPAGGSVDIS SKLTKNSIGE NLHLIDFELR IKHRGAGVPA EILSQMYEED NKEQSEEGFS LAVSRNLLRL
1101: MNGDIRHLRE AGMSTFILTA ELAAAPSAVG R

Best Arabidopsis Sequence Match ( AT1G09570.1 )
(BLAST)

0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.