Factsheet for GSMUA_Achr5P27310_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32940_001	Banana	cytosol	25.81	34.48
HORVU0Hr1G023250.4	Barley	cytosol	44.52	19.83
HORVU1Hr1G068750.7	Barley	cytosol	43.87	19.15
TraesCS4B01G052000.1	Wheat	mitochondrion	61.29	10.73
GSMUA_Achr8P06130_001	Banana	cytosol, mitochondrion	67.1	9.67
Zm00001d008542_P001	Maize	cytosol	14.84	9.5
PGSC0003DMT400040772	Potato	cytosol	64.52	8.9
Solyc10g044670.1.1	Tomato	extracellular	63.87	8.82
KRG90417	Soybean	nucleus	63.87	8.82
AT1G09570.3	Thale cress	cytosol	63.87	8.79
CDY50896	Canola	endoplasmic reticulum, plastid, vacuole	65.81	8.79
OQU91090	Sorghum	nucleus	63.87	8.75
Os03t0719800-01	Rice	plastid	63.23	8.69
HORVU4Hr1G008610.2	Barley	mitochondrion	63.23	8.67
Zm00001d033799_P001	Maize	cytosol	63.23	8.66
CDY06362	Canola	cytosol, plastid	62.58	8.65
Bra031672.1-P	Field mustard	cytosol, plastid	62.58	8.65
CDY22632	Canola	cytosol, plastid	62.58	8.64
VIT_14s0060g00100.t01	Wine grape	nucleus	62.58	8.63
Zm00001d013402_P005	Maize	nucleus	62.58	8.58
TraesCS4D01G052200.1	Wheat	plastid	62.58	8.55
KRH68382	Soybean	endoplasmic reticulum, plastid, vacuole	52.9	8.42
KRG96653	Soybean	nucleus	61.29	8.41
TraesCS4A01G262900.1	Wheat	mitochondrion	61.29	8.41
CDX93501	Canola	cytosol	65.16	8.4
KRH33709	Soybean	endoplasmic reticulum, golgi, plastid	64.52	8.4
Bra020013.1-P	Field mustard	cytosol	65.16	8.35
GSMUA_Achr6P00080_001	Banana	mitochondrion	50.32	7.78
GSMUA_Achr3P08340_001	Banana	nucleus	47.74	6.8
OQU91089	Sorghum	cytosol	0.0	0.0
GSMUA_Achr4P32930_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.450.40	MapMan:35.1	InterPro:GAF	InterPro:GAF-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0018298
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G27310_001	EnsemblPlants:GSMUA_Achr5P27310_001	EnsemblPlants:GSMUA_Achr5T27310_001	InterPro:IPR016132	InterPro:IPR029016
UniProt:M0T256	PFAM:PF01590	PFscan:PS50046	PANTHER:PTHR43719	PANTHER:PTHR43719:SF13	InterPro:Phyto_chromo_attachment
SUPFAM:SSF55781	UniParc:UPI000295733C	:	:	:	:

Description

Phytochrome A [Source:GMGC_GENE;Acc:GSMUA_Achr5G27310_001]

Coordinates

chr5:+:27852550..27853169

Molecular Weight (calculated)

17213.6 Da

IEP (calculated)

6.103

GRAVY (calculated)

-0.325

Length

155 amino acids

Sequence
(BLAST)

001: MVDFEPIKPS EVPTTATGAL QSYKLTAKPT AKLKSLPGGS MRRLCNTVVE EVFELTGYDR VMVYRFHDDD HGEVLAEITK RGLDPYPGLP SHGCPLQYME
101: TMNSISSLVL AVVVNGSGKE DDDDAEPGRR NRLWGLVVCH NQSPRFVPFP LRYAC

Best Arabidopsis Sequence Match ( AT1G09570.3 )
(BLAST)

0001: MEKKMSGSRP TQSSEGSRRS RHSARIIAQT TVDAKLHADF EESGSSFDYS TSVRVTGPVV ENQPPRSDKV TTTYLHHIQK GKLIQPFGCL LALDEKTFKV
0101: IAYSENASEL LTMASHAVPS VGEHPVLGIG TDIRSLFTAP SASALQKALG FGDVSLLNPI LVHCRTSAKP FYAIIHRVTG SIIIDFEPVK PYEVPMTAAG
0201: ALQSYKLAAK AITRLQSLPS GSMERLCDTM VQEVFELTGY DRVMAYKFHE DDHGEVVSEV TKPGLEPYLG LHYPATDIPQ AARFLFMKNK VRMIVDCNAK
0301: HARVLQDEKL SFDLTLCGST LRAPHSCHLQ YMANMDSIAS LVMAVVVNEE DGEGDAPDAT TQPQKRKRLW GLVVCHNTTP RFVPFPLRYA CEFLAQVFAI
0401: HVNKEVELDN QMVEKNILRT QTLLCDMLMR DAPLGIVSQS PNIMDLVKCD GAALLYKDKI WKLGTTPSEF HLQEIASWLC EYHMDSTGLS TDSLHDAGFP
0501: RALSLGDSVC GMAAVRISSK DMIFWFRSHT AGEVRWGGAK HDPDDRDDAR RMHPRSSFKA FLEVVKTRSL PWKDYEMDAI HSLQLILRNA FKDSETTDVN
0601: TKVIYSKLND LKIDGIQELE AVTSEMVRLI ETATVPILAV DSDGLVNGWN TKIAELTGLS VDEAIGKHFL TLVEDSSVEI VKRMLENALE GTEEQNVQFE
0701: IKTHLSRADA GPISLVVNAC ASRDLHENVV GVCFVAHDLT GQKTVMDKFT RIEGDYKAII QNPNPLIPPI FGTDEFGWCT EWNPAMSKLT GLKREEVIDK
0801: MLLGEVFGTQ KSCCRLKNQE AFVNLGIVLN NAVTSQDPEK VSFAFFTRGG KYVECLLCVS KKLDREGVVT GVFCFLQLAS HELQQALHVQ RLAERTAVKR
0901: LKALAYIKRQ IRNPLSGIMF TRKMIEGTEL GPEQRRILQT SALCQKQLSK ILDDSDLESI IEGCLDLEMK EFTLNEVLTA STSQVMMKSN GKSVRITNET
1001: GEEVMSDTLY GDSIRLQQVL ADFMLMAVNF TPSGGQLTVS ASLRKDQLGR SVHLANLEIR LTHTGAGIPE FLLNQMFGTE EDVSEEGLSL MVSRKLVKLM
1101: NGDVQYLRQA GKSSFIITAE LAAANK

Arabidopsis Description

PHYAphytochrome A [Source:TAIR;Acc:AT1G09570]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.